CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019759.1-P	Field mustard	plastid	98.92	89.98
CDY19343	Canola	cytosol	19.65	84.26
CDY30072	Canola	nucleus, plastid	88.55	79.77
AT1G12330.1	Thale cress	nucleus	82.29	75.45
CDY21046	Canola	nucleus, plastid	71.92	75.17
CDY31261	Canola	nucleus, plastid	74.95	72.59
CDY53856	Canola	cytosol, plastid	36.93	54.11
VIT_02s0241g00060.t01	Wine grape	plastid	50.97	49.58
KRH60459	Soybean	nucleus	46.22	48.53
KRH41761	Soybean	plastid	49.46	46.45
PGSC0003DMT400010099	Potato	plastid	46.22	44.86
Solyc08g079510.2.1	Tomato	plastid	45.36	44.4
GSMUA_Achr8P19390_001	Banana	plastid	32.83	38.19
GSMUA_Achr5P18790_001	Banana	mitochondrion	29.37	37.99
TraesCS4D01G224300.1	Wheat	peroxisome, plastid	35.64	37.93
Zm00001d028423_P001	Maize	plastid	35.21	37.91
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	35.21	37.3
Zm00001d047916_P001	Maize	plastid	34.34	37.06
TraesCS4B01G224000.1	Wheat	plastid	35.42	37.02
Os03t0249100-01	Rice	plasma membrane	35.42	36.85
KXG39773	Sorghum	cytosol, nucleus, plastid	34.34	36.22
CDY67745	Canola	plastid	26.35	33.42
CDX91157	Canola	nucleus	28.08	27.31
CDX85683	Canola	nucleus	27.86	27.04
HORVU4Hr1G063050.1	Barley	mitochondrion	15.12	26.52
CDY53973	Canola	nucleus	29.37	25.05
CDX70481	Canola	cytosol	29.16	25.0
CDY55867	Canola	cytosol	28.73	24.58

Protein Annotations

EnsemblPlants:CDX98071	EnsemblPlantsGene:GSBRNA2T00105450001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF4	ProteinID:CDX98071
ProteinID:CDX98071.1	SEG:seg	UniParc:UPI0004EF4D31	MapMan:35.1	:	:

Description

BnaA06g08220D

Coordinates

chrLK031902:-:851891..854091

Molecular Weight (calculated)

52225.4 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.600

Length

463 amino acids

Sequence
(BLAST)

001: MAPSSSSSPS KSPVPSLHPS LHFTPIPECE EDNFHEERYK NRATPSSDGG SSATPSRHRH HRRSNEENNY QHTLTPLHHN GNRKRQDHDD EYGGAVSCNK
101: CRPHHSHRDK FSVVPLESHH NNNPSFISSP NLIIKSIFQS LTRRSPKPSS AAPLPPRSSS SSASTAADAS REEQWRLAVA ELSHKLIQAT KKKEDAVVEA
201: SRLKTSMSEL EKKLNKLEIY CHNLKSGLDE IIQQFLVSVS ESRSSIRALS RALASQLRTN PKSLIFYLEA ILSRAFFEDF EASGFQKNGS TRILNPIDRC
301: ESNYASFNVL MELTWDEVLS RGTKHFSEEF SRFCDRKMSD VVSMLCWNRA WPEPLLQAFF GASKSVWLVH LLANSVNPGL QIFRVEKDDR FDPVYMEETG
401: GDRYKSVVRA MVQPGFYVYG SVVKCKVVCK HCGDEEEVVE DRVVKECNKS DKSLISICSP LGV

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.