Factsheet for GSMUA_Achr8P19390_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
plasma membrane 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P18790_001	Banana	mitochondrion	57.04	63.41
CDY19343	Canola	cytosol	12.81	47.22
Zm00001d028423_P001	Maize	plastid	43.97	40.7
Zm00001d047916_P001	Maize	plastid	43.72	40.56
TraesCS4D01G224300.1	Wheat	peroxisome, plastid	44.22	40.46
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	44.22	40.27
KXG39773	Sorghum	cytosol, nucleus, plastid	43.97	39.86
TraesCS4B01G224000.1	Wheat	plastid	44.22	39.73
Os03t0249100-01	Rice	plasma membrane	42.96	38.43
KRH60459	Soybean	nucleus	39.95	36.05
KRH41761	Soybean	plastid	42.46	34.28
PGSC0003DMT400010099	Potato	plastid	40.7	33.96
VIT_02s0241g00060.t01	Wine grape	plastid	39.95	33.4
Solyc08g079510.2.1	Tomato	plastid	39.45	33.19
CDX98071	Canola	nucleus, plastid	38.19	32.83
CDY21046	Canola	nucleus, plastid	36.18	32.51
CDY31261	Canola	nucleus, plastid	37.19	30.96
GSMUA_Achr9P20170_001	Banana	cytosol	25.38	30.33
Bra019759.1-P	Field mustard	plastid	38.44	30.06
Bra016777.1-P	Field mustard	nucleus, plastid	36.93	29.7
CDY53856	Canola	cytosol, plastid	23.37	29.43
AT1G12330.1	Thale cress	nucleus	37.19	29.31
CDY30072	Canola	nucleus, plastid	37.69	29.18
HORVU4Hr1G063050.1	Barley	mitochondrion	17.34	26.14
Bra028382.1-P	Field mustard	cytosol	20.6	23.98
GSMUA_Achr9P12540_001	Banana	nucleus	27.64	19.16
GSMUA_Achr3P03800_001	Banana	nucleus	27.39	19.12
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	27.14	18.56
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	27.64	17.3
GSMUA_Achr7P02030_001	Banana	cytosol	25.38	15.96

Protein Annotations

EnsemblPlants:GSMUA_Achr8P19390_001	EnsemblPlants:GSMUA_Achr8T19390_001	EnsemblPlantsGene:GSMUA_Achr8G19390_001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF4
SEG:seg	UniParc:UPI0002965F31	UniProt:M0TRU2	MapMan:35.1	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G19390_001]

Coordinates

chr8:-:24640624..24641886

Molecular Weight (calculated)

42985.0 Da

IEP (calculated)

9.387

GRAVY (calculated)

-0.302

Length

398 amino acids

Sequence
(BLAST)

001: MATTRRPSRS RGHDDSEGVS VSCNNCRPTS RDKLISVVPL DTASGRQHPT AFSSSSPGQG GLLRSLFFSL TGRSPAVSSA AAASSAIRED QWRFLAAELS
101: RKLIHTTRKR DEAVLEASRL KQSLAELDDK IDRLESHCCD LRAALQSGPA PGPSSGTFPA ESFHLAVADA RAAVRHLARS LIAQLRLSPP GSLNPGGLVF
201: YMEALLNRVL YDGFEKDEEE EARQIDPAVR CAASRAGYEA VRGLGWEEVL SNGTRHYSEG LSRFCDRKMS EVVVMVGLAR AWPEGLLQAF FGAAKGAWVV
301: RLMARSVHPA VPALRAGRGA RFDGRFMEDV ASDRARRQTT ACVRAMVAPG FHVYNNNGGG GVVKCTVLCA YNSECGNNGR SDTTMVTRDL RSCSVGKK

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.