Factsheet for GSMUA_Achr8P25600_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P29680_001
GSMUA_Achr6P32490_001
GSMUA_Achr9P04820_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	GSMUA_Achr5P29680_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr6P32490_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr9P04820_001	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	70.6	77.15
GSMUA_Achr9P20170_001	Banana	cytosol	36.64	69.97
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	7.7	64.47
GSMUA_Achr3P03800_001	Banana	nucleus	56.76	63.33
GSMUA_Achr9P12540_001	Banana	nucleus	56.45	62.54
Os08t0508100-01	Rice	plastid	53.46	56.38
EES14272	Sorghum	plastid	52.67	55.01
CDY67745	Canola	plastid	31.13	54.25
TraesCS7D01G244400.1	Wheat	plastid	50.63	54.21
TraesCS7A01G245900.1	Wheat	plastid	50.79	54.1
TraesCS7B01G145600.1	Wheat	plastid	50.47	53.59
GSMUA_Achr7P02030_001	Banana	cytosol	53.3	53.55
Zm00001d031444_P001	Maize	plastid	50.47	53.32
VIT_06s0004g01680.t01	Wine grape	cytosol	48.11	51.78
KRH10167	Soybean	nucleus	46.54	51.21
Zm00001d020937_P001	Maize	plastid	47.17	51.19
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	48.27	51.0
KRH24675	Soybean	nucleus	47.17	50.93
EER99087	Sorghum	plastid	46.86	50.51
Os09t0488800-01	Rice	plastid	48.58	50.49
KRH29674	Soybean	cytosol	46.54	50.34
HORVU5Hr1G073320.1	Barley	nucleus	41.2	49.72
KRH23169	Soybean	nucleus, plastid	43.08	48.84
TraesCS5B01G264800.2	Wheat	plastid	47.48	48.55
TraesCS5D01G273100.1	Wheat	plastid	46.7	48.21
Zm00001d006025_P001	Maize	plastid	45.91	48.11
TraesCS5A01G265200.2	Wheat	plastid	47.17	48.0
PGSC0003DMT400055002	Potato	nucleus	45.75	47.24
PGSC0003DMT400081474	Potato	cytosol	44.34	46.92
Solyc01g006690.2.1	Tomato	nucleus	44.65	46.71
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	39.78	46.51
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	46.7	46.26
Bra023381.1-P	Field mustard	nucleus	34.12	46.17
CDX85683	Canola	nucleus	34.59	46.12
CDX91157	Canola	nucleus	34.28	45.8
AT5G12900.1	Thale cress	nucleus, plastid	39.47	44.66
Bra008872.1-P	Field mustard	plastid	36.48	44.62
Bra006167.1-P	Field mustard	plastid	35.22	44.27
CDY53973	Canola	nucleus	37.74	44.2
CDY55867	Canola	cytosol	37.11	43.62
CDX70481	Canola	cytosol	36.48	42.96
Solyc01g014120.2.1	Tomato	cytosol, nucleus	18.24	33.72
Solyc01g014380.2.1	Tomato	nucleus	15.09	31.48
GSMUA_Achr5P18790_001	Banana	mitochondrion	17.14	30.45
GSMUA_Achr8P19390_001	Banana	plastid	17.3	27.64

Protein Annotations

EnsemblPlants:GSMUA_Achr8P25600_001	EnsemblPlants:GSMUA_Achr8T25600_001	EnsemblPlantsGene:GSMUA_Achr8G25600_001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3
SEG:seg	UniParc:UPI000295F3DF	UniProt:M0TTL3	MapMan:35.1	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G25600_001]

Coordinates

chr8:+:29418652..29425240

Molecular Weight (calculated)

71298.3 Da

IEP (calculated)

6.839

GRAVY (calculated)

-0.375

Length

636 amino acids

Sequence
(BLAST)

001: MEGDDVWSCV QNVDHAWHLV RALFVPVYHH PFLPLSSIPP MPWKMLSSMD LPSGGGGVAA AAQAHGINRQ HVQAAIVKAA ELRALHAALL QGGSGGSPAA
101: VRLPAGASPS VSRGASQFTV PEDYPVFTPS YEEDPLPGYH YFHPENRSLS QIWNEIGLEE GKYSEAVAFV NRSTNKLSPS ISELHIPSAI ENVSNGTSCA
201: NHMPLLQPSS EADDVKSLGR RTESGEYTTV LTNDTCNQET VNMEVGGDRK NLKNAKRTEV SHDPEQSVKT HIKHRGSGLS WLFPKSKKKS KPEMSPKMME
301: SEGMSQILKE WGVLSLESLK KELLEANENR DAALAEVSEM RSSLGELQQK LVSLEAYCAE LKKALKHGMH PKSSQISDRS NLSKRTKAMS SNRDNSMPVS
401: QEVMVEGFLQ IVSEARLSVK QFCKMLIHQI EESDDDLSEK LNLLLQPHQM ALITGKYSKG VIYHLEAFVN QTLYQDFENC VFHKNGCPKF LDPREECREN
501: FSSFVGLRNL SWNEVLQKGT KYYSEDFSRF CDQKMSCIVS MLDCSAPWPE QLLQCFFIAA KCIWLLHLLA FSFSPPLTIL RVEEDREFNP LYMEDIPLDR
601: HRLQGATRVK IMVMPGFYVQ DRVLKCRVLC RHGSVP

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.