Factsheet for Solyc01g006690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g048620.2.1
Solyc06g048950.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	Solyc06g048620.2.1	AT3G56370.1	15618632
AT5G12900.1	Solyc06g048950.2.1	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055002	Potato	nucleus	96.22	94.97
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	9.7	77.63
VIT_06s0004g01680.t01	Wine grape	cytosol	67.6	69.54
KRH10167	Soybean	nucleus	62.5	65.74
KRH23169	Soybean	nucleus, plastid	59.87	64.88
KRH24675	Soybean	nucleus	61.84	63.84
CDY67745	Canola	plastid	37.99	63.29
KRH29674	Soybean	cytosol	60.36	62.41
GSMUA_Achr9P20170_001	Banana	cytosol	32.07	58.56
Solyc01g014120.2.1	Tomato	cytosol, nucleus	31.09	54.94
Solyc01g014380.2.1	Tomato	nucleus	27.47	54.75
Bra023381.1-P	Field mustard	nucleus	42.11	54.47
CDX85683	Canola	nucleus	42.43	54.09
CDX91157	Canola	nucleus	42.27	53.99
Bra008872.1-P	Field mustard	plastid	44.08	51.54
Bra006167.1-P	Field mustard	plastid	42.76	51.38
CDY53973	Canola	nucleus	45.89	51.38
CDY55867	Canola	cytosol	45.56	51.2
AT5G12900.1	Thale cress	nucleus, plastid	47.2	51.07
GSMUA_Achr9P12540_001	Banana	nucleus	47.53	50.35
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	48.19	50.34
GSMUA_Achr3P03800_001	Banana	nucleus	46.71	49.82
CDX70481	Canola	cytosol	44.24	49.81
Os08t0508100-01	Rice	plastid	47.53	47.93
EES14272	Sorghum	plastid	47.86	47.78
TraesCS7D01G244400.1	Wheat	plastid	44.74	45.79
TraesCS7A01G245900.1	Wheat	plastid	44.9	45.73
Zm00001d020937_P001	Maize	plastid	43.91	45.56
Os09t0488800-01	Rice	plastid	45.56	45.26
HORVU5Hr1G073320.1	Barley	nucleus	39.14	45.16
EER99087	Sorghum	plastid	43.75	45.08
TraesCS7B01G145600.1	Wheat	plastid	44.41	45.08
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	46.71	44.65
Zm00001d031444_P001	Maize	plastid	44.08	44.52
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	43.42	43.85
TraesCS5D01G273100.1	Wheat	plastid	43.75	43.18
Zm00001d006025_P001	Maize	plastid	42.93	43.0
TraesCS5B01G264800.2	Wheat	plastid	43.59	42.6
TraesCS5A01G265200.2	Wheat	plastid	43.75	42.56
GSMUA_Achr7P02030_001	Banana	cytosol	43.91	42.18
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	43.26	40.97
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	35.03	39.15
Solyc08g079510.2.1	Tomato	plastid	24.51	31.5

Protein Annotations

EnsemblPlants:Solyc01g006690.2.1	EnsemblPlantsGene:Solyc01g006690.2	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	ncoils:Coil
PANTHER:PTHR31029	PANTHER:PTHR31029:SF3	SEG:seg	UniParc:UPI00027624C6	UniProt:K4ASN5	MapMan:35.1

Description

No Description!

Coordinates

chr1:-:1267165..1270752

Molecular Weight (calculated)

68640.4 Da

IEP (calculated)

8.161

GRAVY (calculated)

-0.516

Length

608 amino acids

Sequence
(BLAST)

001: MASATTSSST NKIQEYDEVT SYKNKNCEVF VNRQEIKDAI AKAIELRALH AALLQQQQGN SPMKKFPSSA SPTLSLHSHH FSSQDYPIFT PSYEDEPLPG
101: YKQLHLDHNP NYAEVWDEYG VVNGNNESVL SDYRKANSTF KNGFTNSLIN LEPHMCPADD QRSVTSSCTD HVTTRKASPI ARYIKSRRNS LGDLNSISSC
201: NKCKPATIST EVDGGGSSTS KSGKNSNVIV PLTDSHVSVQ SQPKSKGGMN LSWLFPKLKK KNKVEISPNR TDQSDEVLKD HHIGMVSIET LKKELMEANE
301: SRDAALIEVS GMKSSLGELK QKLEYLETYC EELKKALRQA IQATESPVSS NKLRTFPNGK SIDGDGENVI PVNDEVMLEG FLQMVSESRL SVKQFSKTLI
401: GQIEATDNLL TDNLNLLLQP YKLSLNSKYS KAVLYHIESI INQSLFQDFE NCVFQKNGSA KHLDPQQDRH AQFSSFVALR NLSWNEVLRK GTKYYSEEFS
501: KFCDQKMSCI IATLNWTRPW PEQLLQAFFV AAKCIWLLHL LAFSFNPSLG ILRVEENRTF DMHYMEDVFA DRQRSQGPSK VKVMVMPGFY VHDRVLRCKV
601: ICRYKNVS

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.