Factsheet for PGSC0003DMT400055002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400042952
PGSC0003DMT400070944

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	PGSC0003DMT400042952	AT3G56370.1	15618632
AT5G12900.1	PGSC0003DMT400070944	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006690.2.1	Tomato	nucleus	94.97	96.22
VIT_06s0004g01680.t01	Wine grape	cytosol	67.53	70.39
PGSC0003DMT400081474	Potato	cytosol	68.18	69.88
KRH10167	Soybean	nucleus	62.01	66.09
KRH24675	Soybean	nucleus	62.34	65.2
KRH23169	Soybean	nucleus, plastid	58.93	64.71
KRH29674	Soybean	cytosol	61.04	63.95
CDY67745	Canola	plastid	37.5	63.29
GSMUA_Achr9P20170_001	Banana	cytosol	32.47	60.06
Bra023381.1-P	Field mustard	nucleus	41.88	54.89
CDX85683	Canola	nucleus	42.21	54.51
CDX91157	Canola	nucleus	41.88	54.2
Bra008872.1-P	Field mustard	plastid	44.32	52.5
CDY53973	Canola	nucleus	46.1	52.3
CDY55867	Canola	cytosol	45.78	52.13
AT5G12900.1	Thale cress	nucleus, plastid	47.24	51.78
Bra006167.1-P	Field mustard	plastid	42.37	51.58
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	48.7	51.55
GSMUA_Achr9P12540_001	Banana	nucleus	46.92	50.35
CDX70481	Canola	cytosol	43.83	50.0
GSMUA_Achr3P03800_001	Banana	nucleus	46.1	49.82
Os08t0508100-01	Rice	plastid	47.08	48.09
EES14272	Sorghum	plastid	47.24	47.78
TraesCS7D01G244400.1	Wheat	plastid	44.48	46.13
TraesCS7A01G245900.1	Wheat	plastid	44.64	46.06
Zm00001d020937_P001	Maize	plastid	43.67	45.9
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	47.24	45.75
Os09t0488800-01	Rice	plastid	45.13	45.42
EER99087	Sorghum	plastid	43.51	45.42
TraesCS7B01G145600.1	Wheat	plastid	44.16	45.41
HORVU5Hr1G073320.1	Barley	nucleus	38.8	45.35
Zm00001d031444_P001	Maize	plastid	43.67	44.68
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	42.69	43.69
Zm00001d006025_P001	Maize	plastid	43.02	43.66
TraesCS5D01G273100.1	Wheat	plastid	43.18	43.18
GSMUA_Achr7P02030_001	Banana	cytosol	43.99	42.81
TraesCS5B01G264800.2	Wheat	plastid	43.18	42.77
TraesCS5A01G265200.2	Wheat	plastid	43.34	42.72
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	42.86	41.12
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	35.06	39.71
PGSC0003DMT400010099	Potato	plastid	24.84	32.08

Protein Annotations

EnsemblPlants:PGSC0003DMT400055002	EnsemblPlantsGene:PGSC0003DMG400021345	EntrezGene:102591344	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3	PGSC:PGSC0003DMG400021345	RefSeq:XP_006348419.1	SEG:seg
UniParc:UPI000296A8D4	UniProt:M1BX72	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021345]

Coordinates

chr1:-:2515180..2519197

Molecular Weight (calculated)

69464.3 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.533

Length

616 amino acids

Sequence
(BLAST)

001: MASATTSSTH KFQEYDDDEV TSYKNKNCEV VVNRQEIKGA IAKAIELRAL HATLLQQQQQ QGNSPIKKFP SSASPTVSLH SHHFSSQDYP IFTPSYEDEP
101: LPGYKQLHLD HNPNYAELWD EYGFGGVGNG NNESVLSDYR KANSTLKNGF TNSLINLEPH ICPADDQRSV TSSCTDQVTT RKASPIARYI KSRRNSLGDL
201: NSISSCNKCK PATISTEVDG GGSSTSKSGK NSNVIVPLTD SHVSVQSQPK SKGGMNLSWL FPKLKKKNKV ENSPNRTDQS DEVSQVLKDH IGMVSIETLK
301: KELMEANESR DAALIEVLGM KSSLGELKQK LEYLETYCEE LKKALRQAIQ ATESPVSSKL RNFPKNGKSI DGDGENVIPV SDEVMLEGFL QMVSESRLSV
401: KQFCKTLIGQ IEETDNLLTD NLNLLLQPYK LSLNSKYSKA VLYHIESIIN QSLFQDFENC VFQKNGSSKH LDPQHDRHAQ FSSFVALRNL SWNEVLRKGT
501: KYYSEEFSKF CDQKMSCIIA TLNWTRPWPE QLLQAFFVAA KCIWLLHLLA FSFNPSLGIL RVEENRTFDM HYMEDVFADR QRSQGPSKVK VMVMPGFYVH
601: DRVLRCKVIC RYKNVS

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.