Factsheet for HORVU5Hr1G073290.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G081050.3
HORVU4Hr1G050250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	HORVU3Hr1G081050.3	AT3G56370.1	15618632
AT5G12900.1	HORVU4Hr1G050250.1	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G073320.1	Barley	nucleus	80.37	97.91
TraesCS5D01G273100.1	Wheat	plastid	86.92	90.58
TraesCS5B01G264800.2	Wheat	plastid	86.6	89.39
TraesCS5A01G265200.2	Wheat	plastid	86.45	88.8
EER99087	Sorghum	plastid	64.17	69.83
Zm00001d020937_P001	Maize	plastid	62.93	68.94
Os09t0488800-01	Rice	plastid	64.33	67.48
Zm00001d006025_P001	Maize	plastid	63.08	66.72
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	6.85	57.89
GSMUA_Achr9P20170_001	Banana	cytosol	29.44	56.76
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	46.88	51.72
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	42.21	49.82
GSMUA_Achr3P03800_001	Banana	nucleus	43.77	49.3
GSMUA_Achr9P12540_001	Banana	nucleus	43.93	49.13
CDY67745	Canola	plastid	27.73	48.77
VIT_06s0004g01680.t01	Wine grape	cytosol	44.08	47.88
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	46.26	46.7
KRH24675	Soybean	nucleus	42.52	46.35
KRH10167	Soybean	nucleus	41.43	46.02
KRH29674	Soybean	cytosol	41.9	45.75
KRH23169	Soybean	nucleus, plastid	38.94	44.56
CDX85683	Canola	nucleus	32.71	44.03
PGSC0003DMT400081474	Potato	cytosol	40.65	43.43
Bra023381.1-P	Field mustard	nucleus	31.78	43.4
Solyc01g006690.2.1	Tomato	nucleus	40.97	43.26
CDX91157	Canola	nucleus	31.93	43.07
PGSC0003DMT400055002	Potato	nucleus	41.12	42.86
GSMUA_Achr7P02030_001	Banana	cytosol	41.28	41.86
AT5G12900.1	Thale cress	nucleus, plastid	35.83	40.93
CDY53973	Canola	nucleus	34.58	40.88
Bra008872.1-P	Field mustard	plastid	32.87	40.58
Bra006167.1-P	Field mustard	plastid	31.78	40.32
CDY55867	Canola	cytosol	33.8	40.11
CDX70481	Canola	cytosol	33.02	39.26
Solyc01g014120.2.1	Tomato	cytosol, nucleus	16.36	30.52
Solyc01g014380.2.1	Tomato	nucleus	12.46	26.23
HORVU4Hr1G063050.1	Barley	mitochondrion	7.94	19.32

Protein Annotations

EnsemblPlants:HORVU5Hr1G073290.4	EnsemblPlantsGene:HORVU5Hr1G073290	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF5	SEG:seg
UniParc:UPI000B485AAC	UniProt:A0A287RSA9	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:538230890..538233239

Molecular Weight (calculated)

71011.0 Da

IEP (calculated)

9.623

GRAVY (calculated)

-0.485

Length

642 amino acids

Sequence
(BLAST)

001: VSRGAMATAA EAFDHAAPSR PPLPATRQEV QAAAAKAAEL RALHAALRQR AAPNAGARAS TSRSPATIRL PPAASPARSR TAAADEDYPV FTPVSRAPQA
101: CRTCHRRGPC VLGLSSRFKR RWWYRYYRGR VNDICHDNRS RSENWGGITL DRGGDEAAYS DYDDCINGFS SSNSDFHYAA PSSSENHLRS RGVNRIHPAF
201: LQSAPLAGRF PASTGRNAEF KVPSSCGGAF RPATIGRDHG GSEAEALRFL SSSSRVPFSS SHQPPASAHS RAKQRGSQIL SWLFAKAKKK PKPETPPPSS
301: AVIERGNMSQ LLKEWGLLSL DSLRKELAEA NAHRDAAQED AAEMRSSLGE LTTKMMSLEA YCSELKKALR QATDHNGGTD TQSHSRRSSS RSIGASRELP
401: GDGMPVSHEA MVEGFLQIAS EARLSVKQLC KALIQQVEEP DNGLSDKLNL LLQPHQLAIA GRHCSKAVLY HLEAIMNQTL YQEFENPSFQ RNGAARHLDP
501: GQDRRESFAS FVALRNLSWS EVLRKGTRYY SEDLSRFCDQ KMSCVVAALS WSWPWPEQLL QCFFVATKCV WLLHLLAFSF APPLPILRVD DGRAFDQAYM
601: EDILPDRRQT QDLLPLRVKI MVMPGFYVQD RVLKCKVLTT HS

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.