Factsheet for Solyc01g014120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g048620.2.1
Solyc06g048950.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	Solyc06g048620.2.1	AT3G56370.1	15618632
AT5G12900.1	Solyc06g048950.2.1	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g014380.2.1	Tomato	nucleus	74.71	84.26
Solyc01g006690.2.1	Tomato	nucleus	54.94	31.09
VIT_06s0004g01680.t01	Wine grape	cytosol	49.42	28.76
KRH23169	Soybean	nucleus, plastid	45.64	27.99
KRH24675	Soybean	nucleus	46.51	27.16
KRH10167	Soybean	nucleus	45.35	26.99
KRH29674	Soybean	cytosol	45.35	26.53
AT5G12900.1	Thale cress	nucleus, plastid	33.43	20.46
CDY53973	Canola	nucleus	31.4	19.89
Os08t0508100-01	Rice	plastid	34.59	19.73
CDY55867	Canola	cytosol	30.81	19.59
TraesCS7D01G244400.1	Wheat	plastid	33.72	19.53
GSMUA_Achr9P12540_001	Banana	nucleus	32.56	19.51
TraesCS7A01G245900.1	Wheat	plastid	33.43	19.26
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	32.56	19.24
TraesCS7B01G145600.1	Wheat	plastid	33.43	19.2
Bra023381.1-P	Field mustard	nucleus	25.58	18.72
EES14272	Sorghum	plastid	33.14	18.72
GSMUA_Achr3P03800_001	Banana	nucleus	30.81	18.6
CDX85683	Canola	nucleus	25.58	18.45
CDX91157	Canola	nucleus	25.29	18.28
Zm00001d031444_P001	Maize	plastid	31.98	18.27
Bra008872.1-P	Field mustard	plastid	27.62	18.27
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	33.72	18.24
Os09t0488800-01	Rice	plastid	32.27	18.14
TraesCS5B01G264800.2	Wheat	plastid	32.27	17.85
TraesCS5D01G273100.1	Wheat	plastid	31.69	17.69
EER99087	Sorghum	plastid	30.23	17.63
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	30.81	17.61
TraesCS5A01G265200.2	Wheat	plastid	31.98	17.6
Zm00001d020937_P001	Maize	plastid	29.36	17.24
CDX70481	Canola	cytosol	26.16	16.67
Zm00001d006025_P001	Maize	plastid	29.36	16.64
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	30.52	16.36
GSMUA_Achr7P02030_001	Banana	cytosol	29.36	15.96
CDY67745	Canola	plastid	16.57	15.62
Bra006167.1-P	Field mustard	plastid	22.97	15.61
HORVU5Hr1G073320.1	Barley	nucleus	23.55	15.37
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	23.55	14.89
GSMUA_Achr9P20170_001	Banana	cytosol	12.21	12.61
Solyc08g079510.2.1	Tomato	plastid	13.66	9.94
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc01g014120.2.1	EnsemblPlantsGene:Solyc01g014120.2	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3	SEG:seg
UniParc:UPI00027622EE	UniProt:K4AU49	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1:-:11643649..11646290

Molecular Weight (calculated)

37836.2 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.670

Length

344 amino acids

Sequence
(BLAST)

001: MAGASTNFEE NDDDEYNGVI SRQEVQAAIA KAVELRAIHA SLLQGINNNN SPANFIKFPP HSSSSSSPAA NLFSAQDYPI FTPSYEDAPL PGSKQLHLDD
101: RDYADLWDDY GLGGVKNCDE VSISNDRKAN SSLRKGISSN MIKSECHNCP TDDQRSVTGS YTGHITLLRN SPGGDYSNSR RSSLGDLRSL SSYNRSCKPA
201: IVSAETDGAS RSGKTSNVIV PLTNSHSLNQ LQQKSKGMNL SWLFPKLKKK NKNENSPYRR EAEEVSQICK DHIGVVSVEM LRKELAVANE SREAALMEVA
301: EMKSSLGELK QKMEYLETYC EELKKALRQA IQTKESQVSN MLIX

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.