Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 8
  • golgi 4
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400070944 Potato plasma membrane 96.19 96.39
Solyc06g048950.2.1 Tomato plasma membrane 71.78 77.96
VIT_13s0067g03050.t01 Wine grape plasma membrane 72.4 67.6
KRH64211 Soybean plasma membrane 67.35 66.87
KRH53723 Soybean plasma membrane 66.94 66.46
AT3G56370.1 Thale cress plasma membrane 64.06 64.52
CDY27220 Canola plasma membrane 62.1 64.42
CDX72142 Canola plasma membrane 61.59 63.89
Bra007241.1-P Field mustard plasma membrane 62.92 63.71
GSMUA_Achr9P04820_001 Banana plasma membrane 50.67 62.92
GSMUA_Achr5P29680_001 Banana plasma membrane 47.48 61.55
GSMUA_Achr6P32490_001 Banana plasma membrane 48.2 61.1
Os03t0335500-01 Rice plasma membrane 61.07 61.07
TraesCS4D01G172000.1 Wheat plasma membrane 60.45 60.33
EER94903 Sorghum plasma membrane 60.25 60.19
TraesCS4A01G135200.1 Wheat plasma membrane 60.25 60.12
TraesCS4B01G169900.1 Wheat plasma membrane 60.35 60.04
HORVU4Hr1G050250.1 Barley plasma membrane 60.14 60.02
Solyc09g015520.2.1 Tomato plasma membrane 59.63 60.0
Zm00001d029059_P001 Maize plasma membrane 59.73 59.67
Os01t0821900-01 Rice peroxisome, plasma membrane 46.14 57.81
Os05t0478300-01 Rice plasma membrane, plastid, vacuole 45.42 56.04
HORVU3Hr1G081050.3 Barley plastid 47.89 55.42
TraesCS3B01G376200.1 Wheat plasma membrane 53.35 54.76
TraesCS3D01G337800.1 Wheat plasma membrane 53.45 54.75
TraesCS3A01G344300.1 Wheat plasma membrane 49.02 54.59
Zm00001d043058_P001 Maize plasma membrane 52.73 53.95
EES03806 Sorghum plasma membrane 52.52 53.8
EES18394 Sorghum plasma membrane, plastid 48.71 50.11
Zm00001d038481_P001 Maize plasma membrane, plastid 47.79 47.59
Solyc09g098290.2.1 Tomato plasma membrane 43.67 41.9
Solyc08g079740.2.1 Tomato plasma membrane 36.35 40.02
Solyc08g061560.2.1 Tomato plasma membrane 30.59 30.0
Solyc03g007050.2.1 Tomato extracellular 29.97 29.85
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.7Gene3D:3.30.200.20Gene3D:3.80.10.10GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538InterPro:IPR000719InterPro:IPR001611
InterPro:IPR032675UniProt:K4C5A9InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtypPFAM:PF07714PFAM:PF08263PFAM:PF13855PRINTS:PR00019ScanProsite:PS00107
PFscan:PS50011PANTHER:PTHR27000PANTHER:PTHR27000:SF244InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00369
SUPFAM:SSF52047SUPFAM:SSF52058SUPFAM:SSF56112InterPro:Ser-Thr/Tyr_kinase_cat_domSignalP:SignalP-noTMEnsemblPlantsGene:Solyc06g048620.2
EnsemblPlants:Solyc06g048620.2.1TMHMM:TMhelixUniParc:UPI0002766558SEG:seg::
Description
No Description!
Coordinates
chr6:+:31375794..31379499
Molecular Weight (calculated)
104995.0 Da
IEP (calculated)
6.908
GRAVY (calculated)
0.058
Length
971 amino acids
Sequence
(BLAST)
001: MEMRKVFGIV ILCILVSPIS VKALNLSFND DILGLMVFKA DVQDPQGKLV SWNEEDDSPC GWDGIHCNPR SNRVSQIVLD GFGLSGKISR GLMRLQFLRK
101: LSLAKNNFTG SISSSVVQLA YLRILDLSEN NLFGTIPGDF FEQCGPLRSI SLAKNKFSGK VPESLNSCVA LGSLNLSSNQ FSGLLPSGIW SLNGLRSLDL
201: SDNLLDGEIP VGIEGMYNLR AINLRKNHLK GEVPDGIGSC LLLRSIDLSE NYFTGELPKT MQMLSLCNEL ILKHNALVGT VPEWIGEMKS LEMLDLSGNN
301: FSGQLPNSAG KLQSLKLLNV SRNGISGDLP KSMSSCVNLM ALDVSHNSLT GDLPPWVFKL GLRQVLFSEN KLSGGLKNAF ASSLDNSRQK LLALDISRNE
401: LAGEIPLAIG DFHSLQSLNL SRNSLVGNIP ETVGHLKSLD VLDLSENQLN GSIPLELGGA YSLRELKLEK NALTGEIPTS IGNCSALLSL SLSHNGLTGP
501: LPATLAKLSK LQNVDLSFNK LTGILPKQLV NLGHLELFNI SHNQLKGELP SGGFFNTISP YSVSANPSLC GAAANRSCPT VLPKPIVLNP NSTESIPGTI
601: PPTVRHEKKI LSISALIAIS AAAIIVVGVI AITVLNLRVR SATSHSAATL TFSGGDDYSP SQSTDANSGK LVMFSGELDF STGSHALLNK DCELGRGGFG
701: AVYRTVLGDG MPVAIKKLTV SGLVKSQVDF EKEVKKLGKI HHPNLVALQG YYWTPSLQLL IYEFITGGNL YQHIHEGSSK NLLSWNERFN VILGTAKGLA
801: NLHQMNIIHY NLKSSNILID SSGDPKVADY GLARLLPMLD RYVLSSKIQS ALGYMAPEFA CKTVKITDKC DVYGFGVLVL EIVTGKKPVE YMEDDVIVLC
901: DMVRGALEEG KVEECVDKRL HGKFPAEEAI PVMKLGLICT SQVPSNRPNM AEVVNLLEMI RWPSEGQEEL V
Best Arabidopsis Sequence Match ( AT3G56370.1 )
(BLAST)
001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS
Arabidopsis Description
IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.