Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 8
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400055002 | |
| PGSC0003DMT400081474 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56370.1 | PGSC0003DMT400055002 | AT5G12900.1 | 15618632 |
| AT3G56370.1 | PGSC0003DMT400081474 | AT5G12900.1 | 15618632 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g048620.2.1 | Tomato | plasma membrane | 96.39 | 96.19 |
| PGSC0003DMT400042952 | Potato | plasma membrane | 73.17 | 79.31 |
| VIT_13s0067g03050.t01 | Wine grape | plasma membrane | 72.65 | 67.69 |
| KRH64211 | Soybean | plasma membrane | 67.6 | 66.97 |
| KRH53723 | Soybean | plasma membrane | 67.18 | 66.56 |
| CDY27220 | Canola | plasma membrane | 62.54 | 64.74 |
| AT3G56370.1 | Thale cress | plasma membrane | 64.09 | 64.42 |
| CDX72142 | Canola | plasma membrane | 61.92 | 64.1 |
| Bra007241.1-P | Field mustard | plasma membrane | 63.36 | 64.03 |
| GSMUA_Achr9P04820_001 | Banana | plasma membrane | 50.67 | 62.79 |
| GSMUA_Achr6P32490_001 | Banana | plasma membrane | 48.4 | 61.23 |
| GSMUA_Achr5P29680_001 | Banana | plasma membrane | 47.27 | 61.15 |
| PGSC0003DMT400068892 | Potato | plasma membrane | 58.82 | 60.77 |
| Os03t0335500-01 | Rice | plasma membrane | 60.89 | 60.76 |
| TraesCS4D01G172000.1 | Wheat | plasma membrane | 60.58 | 60.33 |
| EER94903 | Sorghum | plasma membrane | 60.47 | 60.29 |
| TraesCS4B01G169900.1 | Wheat | plasma membrane | 60.47 | 60.04 |
| HORVU4Hr1G050250.1 | Barley | plasma membrane | 60.27 | 60.02 |
| TraesCS4A01G135200.1 | Wheat | plasma membrane | 60.27 | 60.02 |
| Zm00001d029059_P001 | Maize | plasma membrane | 59.75 | 59.57 |
| Os01t0821900-01 | Rice | peroxisome, plasma membrane | 46.44 | 58.06 |
| Os05t0478300-01 | Rice | plasma membrane, plastid, vacuole | 45.61 | 56.16 |
| HORVU3Hr1G081050.3 | Barley | plastid | 48.19 | 55.66 |
| TraesCS3B01G376200.1 | Wheat | plasma membrane | 53.66 | 54.97 |
| TraesCS3D01G337800.1 | Wheat | plasma membrane | 53.77 | 54.96 |
| TraesCS3A01G344300.1 | Wheat | plasma membrane | 49.33 | 54.82 |
| Zm00001d043058_P001 | Maize | plasma membrane | 52.84 | 53.95 |
| EES03806 | Sorghum | plasma membrane | 52.63 | 53.8 |
| EES18394 | Sorghum | plasma membrane, plastid | 48.81 | 50.11 |
| Zm00001d038481_P001 | Maize | plasma membrane, plastid | 47.88 | 47.59 |
| PGSC0003DMT400055650 | Potato | plasma membrane | 43.24 | 42.58 |
| PGSC0003DMT400010074 | Potato | plasma membrane | 37.05 | 40.7 |
| PGSC0003DMT400079665 | Potato | plasma membrane | 23.01 | 29.81 |
| PGSC0003DMT400048435 | Potato | plasma membrane | 30.44 | 29.8 |
Protein Annotations
| Gene3D:1.10.510.10 | MapMan:18.4.1.7 | Gene3D:3.30.200.20 | Gene3D:3.80.10.10 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004672 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR000719 | InterPro:IPR001611 |
| InterPro:IPR032675 | InterPro:Kinase-like_dom_sf | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp |
| UniProt:M1CN00 | PFAM:PF07714 | PFAM:PF08263 | PFAM:PF13855 | EnsemblPlantsGene:PGSC0003DMG400027585 | PGSC:PGSC0003DMG400027585 |
| EnsemblPlants:PGSC0003DMT400070944 | PRINTS:PR00019 | ScanProsite:PS00107 | PFscan:PS50011 | PANTHER:PTHR27000 | PANTHER:PTHR27000:SF244 |
| InterPro:Prot_kinase_dom | InterPro:Protein_kinase_ATP_BS | SMART:SM00369 | SUPFAM:SSF52047 | SUPFAM:SSF52058 | SUPFAM:SSF56112 |
| InterPro:Ser-Thr/Tyr_kinase_cat_dom | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0002966D87 | SEG:seg | : |
Description
ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027585]
Coordinates
chr6:-:34923093..34927364
Molecular Weight (calculated)
104700.0 Da
IEP (calculated)
6.838
GRAVY (calculated)
0.084
Length
969 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKVFGIVIL CILVSPIFVK ALNLSFNDDI LGLMVFKADV QDPQGKLVSW NEEDDSPCGW NGIHCNPRSN RVSQIVLDGF GLSGKISRGL MRLQFLRKLS
101: LAKNNFTGSI SSSVVQLAYL RILDLSENNL FGTIPGDFFE QCGPLRSISL AKNKFSGKVP ESLNSCVALG SLNLSSNQFS GLLPSGIWSL NGLRSLDLSD
201: NLLDGEIPVG IEGMYNLRAI NLRKNHLKGE VPDGIGSCLL LRSIDLSENS FSGELPKTMQ MLSLCNELIM KHNALVGSVP EWIGEMKSLE MLDLSGNNFS
301: GQFPNSVGKL QSLKLLNVSR NAISGDFPKS MSSCVNLMTL DVSHNSLTGD LPPWVFKLGL RHVLFSENKL SRGLKNAIAS SLENSRQKLL VLDISCNELA
401: GEIPFAIGDF NSLQSLNLSR NSLVGKIPET VGHLKSLDVL DLSENQLNGS IPLELGGAYA LRELKLEKNA LTGEIPTSIG NCSALLSLSL SHNGLTGPVP
501: ATLAKLSNLQ NVDLSFNKLT GILPKQLVNL GHLELFNISH NQLKGELPSG GFFNTISPYS VSANPSLCGA AANRSCPTVL PKPIVLNPNS TESIPGTIPL
601: TVGHEKKILS ISALIAISAA AIIVVGVIAI TVLNLRVRSA TSHSAAALTF SGGDDYSPSH STDANSGKLV MFSGELDFST GSHALLNKDC ELGRGGFGAV
701: YRTVLGDGMP VAIKKLTVSG LVKSQVDFEK EVKKLGKVHH PNVVALQGYY WTPSLQLLIY EFITGGNLYD HIHEGSSKNM LSWNERFNVI LGTAKGMANL
801: HQMNIIHYNL KSSNILIDSS GDPKVADYGL ARLLPMLDRY VLSSKIQSAL GYMAPEFACK TVKITDKCDV YGFGVLVLEI VTGKKPVEYM EDDVIVLCDM
901: VRGALEEGKV EECVDKRLHG KFPAEEAIPV MKLGLICTSQ VPSNRPDMAE VVNILEMIRC PSEGQEELV
101: LAKNNFTGSI SSSVVQLAYL RILDLSENNL FGTIPGDFFE QCGPLRSISL AKNKFSGKVP ESLNSCVALG SLNLSSNQFS GLLPSGIWSL NGLRSLDLSD
201: NLLDGEIPVG IEGMYNLRAI NLRKNHLKGE VPDGIGSCLL LRSIDLSENS FSGELPKTMQ MLSLCNELIM KHNALVGSVP EWIGEMKSLE MLDLSGNNFS
301: GQFPNSVGKL QSLKLLNVSR NAISGDFPKS MSSCVNLMTL DVSHNSLTGD LPPWVFKLGL RHVLFSENKL SRGLKNAIAS SLENSRQKLL VLDISCNELA
401: GEIPFAIGDF NSLQSLNLSR NSLVGKIPET VGHLKSLDVL DLSENQLNGS IPLELGGAYA LRELKLEKNA LTGEIPTSIG NCSALLSLSL SHNGLTGPVP
501: ATLAKLSNLQ NVDLSFNKLT GILPKQLVNL GHLELFNISH NQLKGELPSG GFFNTISPYS VSANPSLCGA AANRSCPTVL PKPIVLNPNS TESIPGTIPL
601: TVGHEKKILS ISALIAISAA AIIVVGVIAI TVLNLRVRSA TSHSAAALTF SGGDDYSPSH STDANSGKLV MFSGELDFST GSHALLNKDC ELGRGGFGAV
701: YRTVLGDGMP VAIKKLTVSG LVKSQVDFEK EVKKLGKVHH PNVVALQGYY WTPSLQLLIY EFITGGNLYD HIHEGSSKNM LSWNERFNVI LGTAKGMANL
801: HQMNIIHYNL KSSNILIDSS GDPKVADYGL ARLLPMLDRY VLSSKIQSAL GYMAPEFACK TVKITDKCDV YGFGVLVLEI VTGKKPVEYM EDDVIVLCDM
901: VRGALEEGKV EECVDKRLHG KFPAEEAIPV MKLGLICTSQ VPSNRPDMAE VVNILEMIRC PSEGQEELV
001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS
Arabidopsis Description
IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.