Factsheet for PGSC0003DMT400081474

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400042952
PGSC0003DMT400070944

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	PGSC0003DMT400042952	AT3G56370.1	15618632
AT5G12900.1	PGSC0003DMT400070944	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g014380.2.1	Tomato	nucleus	46.26	91.15
PGSC0003DMT400055002	Potato	nucleus	69.88	68.18
VIT_06s0004g01680.t01	Wine grape	cytosol	64.39	65.48
KRH10167	Soybean	nucleus	61.4	63.84
KRH24675	Soybean	nucleus	62.56	63.84
KRH23169	Soybean	nucleus, plastid	58.74	62.92
KRH29674	Soybean	cytosol	61.06	62.41
CDY67745	Canola	plastid	35.77	58.9
GSMUA_Achr9P20170_001	Banana	cytosol	31.95	57.66
Bra023381.1-P	Field mustard	nucleus	40.43	51.7
CDX85683	Canola	nucleus	40.77	51.36
CDX91157	Canola	nucleus	40.43	51.05
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	47.92	49.48
Bra008872.1-P	Field mustard	plastid	42.76	49.42
CDY53973	Canola	nucleus	44.43	49.17
AT5G12900.1	Thale cress	nucleus, plastid	45.76	48.93
CDY55867	Canola	cytosol	43.76	48.61
GSMUA_Achr9P12540_001	Banana	nucleus	46.09	48.26
GSMUA_Achr3P03800_001	Banana	nucleus	45.09	47.54
Bra006167.1-P	Field mustard	plastid	39.6	47.04
Os08t0508100-01	Rice	plastid	47.09	46.93
EES14272	Sorghum	plastid	46.42	45.81
CDX70481	Canola	cytosol	41.1	45.74
TraesCS7D01G244400.1	Wheat	plastid	44.93	45.45
HORVU5Hr1G073320.1	Barley	nucleus	39.77	45.35
TraesCS7A01G245900.1	Wheat	plastid	44.93	45.23
TraesCS7B01G145600.1	Wheat	plastid	44.76	44.91
Zm00001d020937_P001	Maize	plastid	43.76	44.88
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	46.92	44.34
Os09t0488800-01	Rice	plastid	44.93	44.12
EER99087	Sorghum	plastid	43.26	44.07
Zm00001d031444_P001	Maize	plastid	43.76	43.69
TraesCS5B01G264800.2	Wheat	plastid	44.26	42.77
TraesCS5D01G273100.1	Wheat	plastid	43.59	42.53
Zm00001d006025_P001	Maize	plastid	42.93	42.5
TraesCS5A01G265200.2	Wheat	plastid	43.76	42.08
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	42.1	42.03
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	43.43	40.65
GSMUA_Achr7P02030_001	Banana	cytosol	42.1	39.97
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	35.11	38.79
PGSC0003DMT400010099	Potato	plastid	24.79	31.24

Protein Annotations

EnsemblPlants:PGSC0003DMT400081474	EnsemblPlantsGene:PGSC0003DMG400031868	EntrezGene:102597595	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3
PGSC:PGSC0003DMG400031868	RefSeq:XP_006361219.1	SEG:seg	UniParc:UPI000296BD9A	UniProt:M1D4V5	MapMan:35.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400031868]

Coordinates

chr1:-:48867474..48870424

Molecular Weight (calculated)

67544.7 Da

IEP (calculated)

7.085

GRAVY (calculated)

-0.530

Length

601 amino acids

Sequence
(BLAST)

001: MAGAITNFEE NDDEYNGVIS RQEVQAAIAK AVELRAIHAS LLQGINNNSN INNSPANFIK FPPHSSSSSS PAANLFSAQE YPIFTPSYED APLPGSKQLH
101: LDDRDYTDLW DDYGLGGVAN CDEVSLSNYR KANSSLRKGV SSNLINSDSH NCPTDDQRSV TGSYTGHITL LRNSPGGDYS NSRRSSLGDL RSLSSYNRSC
201: KPAMVNTETD GASKSGKSSN VIVPLTNSHS LNQLQPKSKG MNLSWLFPKL KKKNKNENSP YRREAEEVSQ ICKDHIGVVS VETLRKELVE ANESREAALM
301: EVAEMKSSLG GLKQKMEYLE TYCEELKKAL RQAIQTKESQ LSNMLIDLPR RGKSTDGDGE NTIPVSEEVM VEGFLQIVSE SRLSVKQFCK TLIAQVEETD
401: NSLTDSLNLL LQPYKLSLNS KHSKAILYHI EAIINQSLFQ DFENVVFQKN GAPKQLDSQQ DCHDQFSSFV SLRNLSWNEV LRKGTKYYSE DFSKFCDQKM
501: CCIITSLNWR RPWPEQLLQA FFVASKCIWL LHLLAFSFDP PLGILRVEEN TTFDKNYMED IFGDRQKSQG TSKVKIMVVP GFYVRDRVHR CKVICRYKSA
601: A

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.