Factsheet for GSMUA_Achr3P03800_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P29680_001
GSMUA_Achr6P32490_001
GSMUA_Achr9P04820_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	GSMUA_Achr5P29680_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr6P32490_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr9P04820_001	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P12540_001	Banana	nucleus	79.12	78.57
GSMUA_Achr9P20170_001	Banana	cytosol	39.47	67.57
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	65.44	64.09
GSMUA_Achr7P02030_001	Banana	cytosol	68.77	61.93
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	8.25	61.84
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	63.33	56.76
EES14272	Sorghum	plastid	57.89	54.19
CDY67745	Canola	plastid	34.21	53.42
Os08t0508100-01	Rice	plastid	56.49	53.4
TraesCS7A01G245900.1	Wheat	plastid	55.09	52.6
TraesCS7D01G244400.1	Wheat	plastid	54.39	52.19
Zm00001d031444_P001	Maize	plastid	54.56	51.66
TraesCS7B01G145600.1	Wheat	plastid	54.04	51.42
VIT_06s0004g01680.t01	Wine grape	cytosol	52.98	51.1
KRH10167	Soybean	nucleus	51.58	50.87
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	52.81	50.0
Os09t0488800-01	Rice	plastid	53.51	49.84
KRH29674	Soybean	cytosol	51.4	49.83
Zm00001d020937_P001	Maize	plastid	51.05	49.66
KRH24675	Soybean	nucleus	51.23	49.58
EER99087	Sorghum	plastid	50.7	48.98
KRH23169	Soybean	nucleus, plastid	47.37	48.13
HORVU5Hr1G073320.1	Barley	nucleus	44.04	47.63
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	44.74	46.88
CDX85683	Canola	nucleus	39.12	46.75
Solyc01g006690.2.1	Tomato	nucleus	49.82	46.71
Zm00001d006025_P001	Maize	plastid	49.65	46.62
Bra023381.1-P	Field mustard	nucleus	38.42	46.6
PGSC0003DMT400055002	Potato	nucleus	49.82	46.1
CDX91157	Canola	nucleus	38.42	46.01
TraesCS5B01G264800.2	Wheat	plastid	50.18	45.98
TraesCS5D01G273100.1	Wheat	plastid	49.47	45.78
TraesCS5A01G265200.2	Wheat	plastid	50.0	45.6
AT5G12900.1	Thale cress	nucleus, plastid	44.56	45.2
PGSC0003DMT400081474	Potato	cytosol	47.54	45.09
Bra006167.1-P	Field mustard	plastid	40.0	45.06
Bra008872.1-P	Field mustard	plastid	40.88	44.81
CDY53973	Canola	nucleus	42.46	44.57
CDY55867	Canola	cytosol	41.75	43.99
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	49.3	43.77
CDX70481	Canola	cytosol	41.4	43.7
Solyc01g014120.2.1	Tomato	cytosol, nucleus	18.6	30.81
GSMUA_Achr5P18790_001	Banana	mitochondrion	19.12	30.45
Solyc01g014380.2.1	Tomato	nucleus	15.09	28.2
GSMUA_Achr8P19390_001	Banana	plastid	19.12	27.39

Protein Annotations

EnsemblPlants:GSMUA_Achr3P03800_001	EnsemblPlants:GSMUA_Achr3T03800_001	EnsemblPlantsGene:GSMUA_Achr3G03800_001	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3	SEG:seg	UniParc:UPI000295F49F	UniProt:M0SBJ8
MapMan:35.1	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G03800_001]

Coordinates

chr3:+:2472012..2474254

Molecular Weight (calculated)

64814.6 Da

IEP (calculated)

8.284

GRAVY (calculated)

-0.450

Length

570 amino acids

Sequence
(BLAST)

001: MASSTASSQA HETQSEDFQA AIAKAVELRS LHAALLKRSN LGGSAVLGPP VGASPSLSRH SNPLSAAEDY PVFTPSYEEE PLWDRHYIQP ENRSLSETWR
101: SINLRTGKND EAVNMSRNVV SASNSEQNVC FTNEHFSKRS TCVNHKLQAS LIADVLNSSS SGTSPAYEAI TTCNSCKPAT INRESESEHK KSKLVTSSSH
201: ESEPPIQVHT KHRGPLLSWL FPRSKKKLKP EMSPNPIESE DMAQLLKEWG LLSLESLKKQ LLEANNNRDA ALAEVSEMRS SLGELQQKLV TLEIHCEELK
301: KALKQTKHVK NDQILDRPNL SRRTKSSGGI KDNLMPVSHE VMVEGFLQMV SEARLSIKQF CKMLIHQIEE TDCNLMEKLN LLLQSHRMAL SNKYSKALTY
401: HIVEALVNQS MYQDFENCVF QKNGSPKFLD PRQDRQENFS SFISLRNLSW NEVLCKGTKS YSEEFSRFCD RKMSCIVSLL NWSRAWPEQL LRCFFVAAKC
501: IWLLHLLAFS FSPPLMILRV EEDQNFDPLY MEEILLGRRR AQIPGRVKTM VVPGFYIEDR VLRCRVLCRY

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.