Factsheet for VIT_06s0004g01680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0067g03050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	VIT_13s0067g03050.t01	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	10.49	81.58
KRH24675	Soybean	nucleus	73.27	73.51
KRH29674	Soybean	cytosol	71.91	72.28
KRH10167	Soybean	nucleus	69.71	71.28
KRH23169	Soybean	nucleus, plastid	66.84	70.41
Solyc01g006690.2.1	Tomato	nucleus	69.54	67.6
PGSC0003DMT400055002	Potato	nucleus	70.39	67.53
PGSC0003DMT400081474	Potato	cytosol	65.48	64.39
CDY67745	Canola	plastid	39.59	64.11
GSMUA_Achr9P20170_001	Banana	cytosol	34.52	61.26
Bra023381.1-P	Field mustard	nucleus	44.33	55.74
CDX85683	Canola	nucleus	44.84	55.56
CDX91157	Canola	nucleus	44.33	55.04
Bra008872.1-P	Field mustard	plastid	47.72	54.23
AT5G12900.1	Thale cress	nucleus, plastid	51.27	53.91
CDY53973	Canola	nucleus	49.24	53.59
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	52.62	53.44
CDY55867	Canola	cytosol	48.73	53.23
GSMUA_Achr3P03800_001	Banana	nucleus	51.1	52.98
GSMUA_Achr9P12540_001	Banana	nucleus	51.44	52.96
Bra006167.1-P	Field mustard	plastid	45.18	52.77
Os08t0508100-01	Rice	plastid	52.28	51.24
Solyc01g014380.2.1	Tomato	nucleus	26.4	51.15
CDX70481	Canola	cytosol	46.53	50.93
EES14272	Sorghum	plastid	51.95	50.41
Solyc01g014120.2.1	Tomato	cytosol, nucleus	28.76	49.42
TraesCS7D01G244400.1	Wheat	plastid	49.24	48.99
TraesCS7A01G245900.1	Wheat	plastid	49.24	48.74
Os09t0488800-01	Rice	plastid	50.42	48.69
TraesCS7B01G145600.1	Wheat	plastid	48.9	48.25
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	51.78	48.11
Zm00001d031444_P001	Maize	plastid	48.73	47.84
HORVU5Hr1G073320.1	Barley	nucleus	42.64	47.82
EER99087	Sorghum	plastid	47.72	47.8
Zm00001d020937_P001	Maize	plastid	47.38	47.78
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	47.21	46.35
TraesCS5D01G273100.1	Wheat	plastid	48.22	46.27
Zm00001d006025_P001	Maize	plastid	47.21	45.96
TraesCS5B01G264800.2	Wheat	plastid	48.22	45.82
TraesCS5A01G265200.2	Wheat	plastid	48.22	45.6
GSMUA_Achr7P02030_001	Banana	cytosol	48.73	45.5
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	47.88	44.08
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	37.9	41.18
VIT_02s0241g00060.t01	Wine grape	plastid	27.07	33.61

Protein Annotations

EntrezGene:100265521	wikigene:100265521	MapMan:35.1	EMBL:AM457806	ProteinID:CAN83195	ProteinID:CAN83195.1
ProteinID:CBI16422	ProteinID:CBI16422.3	ncoils:Coil	UniProt:D7SL94	EMBL:FN594951	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	EntrezGene:LOC100265521	wikigene:LOC100265521	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3
UniParc:UPI00019836B5	ArrayExpress:VIT_06s0004g01680	EnsemblPlantsGene:VIT_06s0004g01680	EnsemblPlants:VIT_06s0004g01680.t01	unigene:Vvi.22454	RefSeq:XP_002283014
RefSeq:XP_002283014.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:2073735..2076455

Molecular Weight (calculated)

66681.3 Da

IEP (calculated)

7.870

GRAVY (calculated)

-0.495

Length

591 amino acids

Sequence
(BLAST)

001: MAAATPATQV FQGHNSNGDH EVSRQEIQAA IAKAVELRAL HAALIQGNSP ANLKYPTASP VSRPPSHFSA QDYPVFTPSY GDEPLPGYHQ LHVENDRNLS
101: ESWDMEGLGG NDNETIMSDY KKEISSRKGL PSGLVSLEPH VCPTEDQKSL TSACANHITV LQTSPGTDFF KSSRRNSLGE FKSLSSCNKC RPAIISTEAE
201: NTVKNSKGSS FVVPLTDSHS SVQSQPKNRG VSLSWLFPRL KKKHKNESSP NRTESEEVSQ IFKDLGIMSI ETLKKELMDA NESRDAALME VAEMKSSLGE
301: LKQKLEYLET YCEELKRVLK QTAQAKDLQA PEKLRSLPKR GKSSIDGNGE NFIPVSEEVM VEGFLQIVSE ARLSVKQFCK ILIGQIEESD NTLTDNLNSL
401: LQPYKLSLTS KYSKAVLYHL EAIINQSLYQ DFENCVFQKN GTAKLLDPHQ DRQARFSSFV ALRNLSWNEV LRKGTKYYSE EFSKFCDQKM SCIISTLNWT
501: RPWPEQLLQS FFVSAKCIWL LHLLAFSFNP PLGILRVEEN RSFDPHYMED MFMDRQRSQG PSRVKIMVMP GFYVQDRVLR CKVLCRYKSV A

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.