Factsheet for Bra023381.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007241.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	Bra007241.1-P	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85683	Canola	nucleus	98.51	97.06
Bra008872.1-P	Field mustard	plastid	72.34	65.38
Bra006167.1-P	Field mustard	plastid	69.57	64.62
AT5G12900.1	Thale cress	nucleus, plastid	76.81	64.23
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	10.21	63.16
GSMUA_Achr9P20170_001	Banana	cytosol	34.26	48.35
KRH10167	Soybean	nucleus	55.74	45.33
KRH23169	Soybean	nucleus, plastid	53.4	44.74
VIT_06s0004g01680.t01	Wine grape	cytosol	55.74	44.33
KRH24675	Soybean	nucleus	54.89	43.8
KRH29674	Soybean	cytosol	54.68	43.71
Solyc01g006690.2.1	Tomato	nucleus	54.47	42.11
PGSC0003DMT400055002	Potato	nucleus	54.89	41.88
PGSC0003DMT400081474	Potato	cytosol	51.7	40.43
GSMUA_Achr3P03800_001	Banana	nucleus	46.6	38.42
GSMUA_Achr9P12540_001	Banana	nucleus	45.53	37.28
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	45.96	37.11
Os08t0508100-01	Rice	plastid	46.81	36.48
TraesCS7D01G244400.1	Wheat	plastid	45.74	36.2
HORVU5Hr1G073320.1	Barley	nucleus	40.43	36.05
EES14272	Sorghum	plastid	46.6	35.96
TraesCS7A01G245900.1	Wheat	plastid	45.53	35.85
TraesCS7B01G145600.1	Wheat	plastid	45.53	35.73
Os09t0488800-01	Rice	plastid	46.38	35.62
Zm00001d020937_P001	Maize	plastid	44.04	35.32
EER99087	Sorghum	plastid	44.04	35.08
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	44.04	34.39
Zm00001d031444_P001	Maize	plastid	44.04	34.39
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	46.17	34.12
Zm00001d006025_P001	Maize	plastid	43.62	33.77
TraesCS5D01G273100.1	Wheat	plastid	44.26	33.77
TraesCS5B01G264800.2	Wheat	plastid	44.04	33.28
TraesCS5A01G265200.2	Wheat	plastid	44.04	33.12
GSMUA_Achr7P02030_001	Banana	cytosol	43.62	32.39
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	43.4	31.78
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	36.6	31.62
Bra016777.1-P	Field mustard	nucleus, plastid	29.79	28.28
Bra019759.1-P	Field mustard	plastid	28.94	26.72
Bra028382.1-P	Field mustard	cytosol	18.94	26.02
Solyc01g014120.2.1	Tomato	cytosol, nucleus	18.72	25.58
Solyc01g014380.2.1	Tomato	nucleus	15.32	23.61

Protein Annotations

EnsemblPlants:Bra023381.1	EnsemblPlants:Bra023381.1-P	EnsemblPlantsGene:Bra023381	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3	SEG:seg
UniParc:UPI0002543410	UniProt:M4E3M8	MapMan:35.1	:	:	:

Description

AT5G12900 (E=3e-118) | unknown protein

Coordinates

chrA02:-:3107707..3109635

Molecular Weight (calculated)

54232.9 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.565

Length

470 amino acids

Sequence
(BLAST)

001: MNMDREKEEV IANGVKMRAL MQKLSPSIRI PSSSSPASRH LHNLSAHDYP VFTPSYGDEP VPAFHRKNLT SSENLDESCV GGEDQDLRHT LRSQTLHFRS
101: VSSCNDYKQR GFDTKSFKNS NLVVPLTDSH SAAVTSQPRN SGGRVLSWLF PKLKRKHKSN SIFNSPSRTE RSEEVPEKLK RELMEANRSR DAALTQVSEM
201: KSSLREFNEK LKYLESYCDG LKKALVSREK MPVSEDVMVE RFLQIVSESR LSIKQFLKSL VAEIDEEDST LISNINTLLQ PHNLSFTSKH SKIIQYHLEA
301: IMSQSIYQDF ENCVFQKNGK PKFLDQEQDR KAKFSSFASL RNLSWNEVME KGTKYHSEEF SRFCDEKMNL IITTLKWTRP WSEQMLQAFF VAAKCVWLLH
401: LLAFSLKPAL GILRVEENRV FESSYMEDMG GDRDRQRSTG SCRPVRVKVM VMPGFYVQDM VLRCKVICRY

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.