CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94903
EES03806
EES18394

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	EER94903	AT3G56370.1	15618632
AT5G12900.1	EES03806	AT3G56370.1	15618632
AT5G12900.1	EES18394	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020937_P001	Maize	plastid	91.69	92.32
Zm00001d006025_P001	Maize	plastid	92.03	89.46
Os09t0488800-01	Rice	plastid	70.51	67.97
HORVU5Hr1G073320.1	Barley	nucleus	60.34	67.55
TraesCS5D01G273100.1	Wheat	plastid	69.66	66.72
TraesCS5B01G264800.2	Wheat	plastid	70.34	66.72
TraesCS5A01G265200.2	Wheat	plastid	70.17	66.24
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	69.83	64.17
EES14272	Sorghum	plastid	60.17	58.29
GSMUA_Achr9P20170_001	Banana	cytosol	32.71	57.96
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	7.29	56.58
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	51.36	52.06
GSMUA_Achr3P03800_001	Banana	nucleus	48.98	50.7
GSMUA_Achr9P12540_001	Banana	nucleus	48.64	50.0
CDY67745	Canola	plastid	30.34	49.04
VIT_06s0004g01680.t01	Wine grape	cytosol	47.8	47.72
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	50.51	46.86
KRH10167	Soybean	nucleus	45.76	46.71
KRH29674	Soybean	cytosol	45.25	45.41
KRH24675	Soybean	nucleus	45.25	45.33
KRH23169	Soybean	nucleus, plastid	42.71	44.92
CDX85683	Canola	nucleus	35.76	44.23
Bra023381.1-P	Field mustard	nucleus	35.08	44.04
CDX91157	Canola	nucleus	35.42	43.91
Solyc01g006690.2.1	Tomato	nucleus	45.08	43.75
PGSC0003DMT400055002	Potato	nucleus	45.42	43.51
PGSC0003DMT400081474	Potato	cytosol	44.07	43.26
GSMUA_Achr7P02030_001	Banana	cytosol	45.93	42.81
AT5G12900.1	Thale cress	nucleus, plastid	39.66	41.64
Bra006167.1-P	Field mustard	plastid	35.42	41.3
CDY53973	Canola	nucleus	37.97	41.25
Bra008872.1-P	Field mustard	plastid	35.93	40.77
CDY55867	Canola	cytosol	37.29	40.67
CDX70481	Canola	cytosol	37.12	40.56
Solyc01g014120.2.1	Tomato	cytosol, nucleus	17.63	30.23
KXG39773	Sorghum	cytosol, nucleus, plastid	20.51	27.56
Solyc01g014380.2.1	Tomato	nucleus	13.73	26.56

Protein Annotations

EnsemblPlants:EER99087	EnsemblPlantsGene:SORBI_3002G247100	EntrezGene:8055876	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF5
ProteinID:EER99087	ProteinID:EER99087.1	RefSeq:XP_002462566.1	SEG:seg	UniParc:UPI0001A84284	UniProt:C5X3X1
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:63515835..63517712

Molecular Weight (calculated)

64884.4 Da

IEP (calculated)

9.086

GRAVY (calculated)

-0.297

Length

590 amino acids

Sequence
(BLAST)

001: MAVVAAGAEA FDPAAPSPSH APPSRQDVQA AIAKAVELRQ LHAALLQRGA PNARAGVGAS RSPAIIRLPP VASPAHSRAA ADEEYPVFTP AYDDEERVAA
101: VALNHICQDN RSRSENWTGV ALDHGGSDDA AMSDYDGLHA FSSSNSEVLF PSSNDHRLRN RGTAAYKIHP AFMHSAPSAD RFLASTGRAA YTSELKLPPA
201: TCGNAFRPAT ISSTRVPPPS AHSRTKQRGP PQILSWLFPK SRKKAKPPEM TTSPTAIERG NMPQLLTEWG ALSLESLKKE LAEAIAHRDA ALREAAEVRS
301: SLGELATKLV SVEAYCSELK KALRQATNSP SVSRRSTRSI EASRELPMPV SHEVMVEGFL QIASEARLSV KQLCKALIQQ VNEESSDGLS DKLNLLLRPY
401: QLALIGSAAK HCSKAVLYHL EAIMNQAMFQ DFENPAFQRN GSPRCLDPAK DRRQSFAAFV ALRNLSWNEV LRKGTKYYSE DFSRFCDRKM SSVVATLGWS
501: RPWPEQLLQC FFVAAKCVWL LHLLAFSFGP PLTILRIQDG RAFDEMYMED ILHDRQQVQS PCQVKIMVMP GFYVQDRVLK CRVLTTRSAA

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.