Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G12900.1 | CDX72142 | AT3G56370.1 | 15618632 |
| AT5G12900.1 | CDY27220 | AT3G56370.1 | 15618632 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023381.1-P | Field mustard | nucleus | 97.06 | 98.51 |
| CDX91157 | Canola | nucleus | 94.34 | 94.54 |
| CDY67745 | Canola | plastid | 60.17 | 78.63 |
| CDY53973 | Canola | nucleus | 79.25 | 69.61 |
| CDY55867 | Canola | cytosol | 77.15 | 68.02 |
| CDX70481 | Canola | cytosol | 74.84 | 66.11 |
| AT5G12900.1 | Thale cress | nucleus, plastid | 77.36 | 65.66 |
| Solyc01g014110.2.1 | Tomato | endoplasmic reticulum, extracellular | 10.27 | 64.47 |
| GSMUA_Achr9P20170_001 | Banana | cytosol | 34.17 | 48.95 |
| CDY19343 | Canola | cytosol | 10.9 | 48.15 |
| KRH10167 | Soybean | nucleus | 55.35 | 45.67 |
| VIT_06s0004g01680.t01 | Wine grape | cytosol | 55.56 | 44.84 |
| KRH23169 | Soybean | nucleus, plastid | 52.62 | 44.74 |
| KRH24675 | Soybean | nucleus | 54.51 | 44.14 |
| KRH29674 | Soybean | cytosol | 54.3 | 44.05 |
| Solyc01g006690.2.1 | Tomato | nucleus | 54.09 | 42.43 |
| PGSC0003DMT400055002 | Potato | nucleus | 54.51 | 42.21 |
| PGSC0003DMT400081474 | Potato | cytosol | 51.36 | 40.77 |
| GSMUA_Achr3P03800_001 | Banana | nucleus | 46.75 | 39.12 |
| GSMUA_Achr9P12540_001 | Banana | nucleus | 45.49 | 37.8 |
| GSMUA_Achr9P27740_001 | Banana | cytosol, nucleus, peroxisome | 45.7 | 37.46 |
| Os08t0508100-01 | Rice | plastid | 46.75 | 36.98 |
| HORVU5Hr1G073320.1 | Barley | nucleus | 40.67 | 36.81 |
| TraesCS7D01G244400.1 | Wheat | plastid | 45.7 | 36.7 |
| Os09t0488800-01 | Rice | plastid | 46.75 | 36.44 |
| TraesCS7A01G245900.1 | Wheat | plastid | 45.49 | 36.35 |
| TraesCS7B01G145600.1 | Wheat | plastid | 45.49 | 36.23 |
| EES14272 | Sorghum | plastid | 46.12 | 36.12 |
| Zm00001d020937_P001 | Maize | plastid | 44.23 | 36.01 |
| EER99087 | Sorghum | plastid | 44.23 | 35.76 |
| Zm00001d031444_P001 | Maize | plastid | 43.82 | 34.72 |
| GSMUA_Achr8P25600_001 | Banana | cytosol, nucleus, peroxisome | 46.12 | 34.59 |
| TraesCS5D01G273100.1 | Wheat | plastid | 44.65 | 34.58 |
| Zm00001d052889_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 43.61 | 34.55 |
| Zm00001d006025_P001 | Maize | plastid | 43.82 | 34.43 |
| TraesCS5B01G264800.2 | Wheat | plastid | 44.44 | 34.08 |
| TraesCS5A01G265200.2 | Wheat | plastid | 44.44 | 33.92 |
| GSMUA_Achr7P02030_001 | Banana | cytosol | 43.61 | 32.86 |
| HORVU5Hr1G073290.4 | Barley | cytosol, nucleus, plastid | 44.03 | 32.71 |
| HORVU7Hr1G050500.2 | Barley | endoplasmic reticulum | 36.69 | 32.17 |
| CDY21046 | Canola | nucleus, plastid | 28.09 | 30.25 |
| CDY31261 | Canola | nucleus, plastid | 30.19 | 30.13 |
| CDY53856 | Canola | cytosol, plastid | 19.5 | 29.43 |
| CDX98071 | Canola | nucleus, plastid | 27.04 | 27.86 |
| CDY30072 | Canola | nucleus, plastid | 28.93 | 26.85 |
| Solyc01g014120.2.1 | Tomato | cytosol, nucleus | 18.45 | 25.58 |
| Solyc01g014380.2.1 | Tomato | nucleus | 15.09 | 23.61 |
Protein Annotations
| EnsemblPlants:CDX85683 | EnsemblPlantsGene:GSBRNA2T00143421001 | PANTHER:PTHR31029 | PANTHER:PTHR31029:SF3 | ProteinID:CDX85683 | ProteinID:CDX85683.1 |
| SEG:seg | UniParc:UPI0004EE5AFB | MapMan:35.1 | : | : | : |
Description
BnaA02g01300D
Coordinates
chrLK031842:+:1184502..1187112
Molecular Weight (calculated)
55067.9 Da
IEP (calculated)
9.478
GRAVY (calculated)
-0.564
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFETRMNM DREKEEVIAN GVKMRALIQK LSPSIRIPSS SSPASRHLHN LSAHDYPVFT PSYGDEPVPA FHRKNLTSSE NLDESCVGGE DQDLRHTLRP
101: QTLHFRSVSS CNDYKQRGFD AKSFKNSNLV VPLTDSHSAA VTSQPRNSGG RVLSWLFPKL KRKHKSNSIF NSPSRTERSE EVPEKLKREL MEANRSRDAA
201: LTQVSEMKSS LREFNEKLQY LESYCDGLKK ALVSREKMPV SEDVMVERFL QIVSESRLSI KQFLKSLVAE IDEEDSTLIS NINTLLQPHN LSFTSKHSKI
301: IQYHLEAIMS QSIYQDFENC VFQKNGKPKF LDQEQDRKAK FSSFASLRNL SWNEVMKKGT KYYSEEFSRF CDEKMNLIIT TLKWTRPWSE QMLQAFFVAA
401: KCVWLLHLLA FSLKPALGIL RVEENRVFES SYMEDMGGDR DRQRSTGSCR PVRVKVMVMP GFYVQDRVLR CKVICRY
101: QTLHFRSVSS CNDYKQRGFD AKSFKNSNLV VPLTDSHSAA VTSQPRNSGG RVLSWLFPKL KRKHKSNSIF NSPSRTERSE EVPEKLKREL MEANRSRDAA
201: LTQVSEMKSS LREFNEKLQY LESYCDGLKK ALVSREKMPV SEDVMVERFL QIVSESRLSI KQFLKSLVAE IDEEDSTLIS NINTLLQPHN LSFTSKHSKI
301: IQYHLEAIMS QSIYQDFENC VFQKNGKPKF LDQEQDRKAK FSSFASLRNL SWNEVMKKGT KYYSEEFSRF CDEKMNLIIT TLKWTRPWSE QMLQAFFVAA
401: KCVWLLHLLA FSLKPALGIL RVEENRVFES SYMEDMGGDR DRQRSTGSCR PVRVKVMVMP GFYVQDRVLR CKVICRY
001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
Arabidopsis Description
IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.