Factsheet for GSMUA_Achr7P02030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P29680_001
GSMUA_Achr6P32490_001
GSMUA_Achr9P04820_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	GSMUA_Achr5P29680_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr6P32490_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr9P04820_001	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P12540_001	Banana	nucleus	63.19	69.69
GSMUA_Achr3P03800_001	Banana	nucleus	61.93	68.77
GSMUA_Achr9P20170_001	Banana	cytosol	33.02	62.76
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	57.03	62.03
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	6.64	55.26
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	53.55	53.3
Os08t0508100-01	Rice	plastid	48.66	51.08
EES14272	Sorghum	plastid	49.13	51.07
CDY67745	Canola	plastid	29.07	50.41
TraesCS7A01G245900.1	Wheat	plastid	46.92	49.75
TraesCS7D01G244400.1	Wheat	plastid	46.45	49.49
Zm00001d031444_P001	Maize	plastid	46.76	49.17
TraesCS7B01G145600.1	Wheat	plastid	46.45	49.08
VIT_06s0004g01680.t01	Wine grape	cytosol	45.5	48.73
KRH10167	Soybean	nucleus	43.29	47.4
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	45.02	47.34
Zm00001d020937_P001	Maize	plastid	43.44	46.93
KRH24675	Soybean	nucleus	43.6	46.86
KRH29674	Soybean	cytosol	43.13	46.43
Os09t0488800-01	Rice	plastid	44.55	46.08
EER99087	Sorghum	plastid	42.81	45.93
HORVU5Hr1G073320.1	Barley	nucleus	37.91	45.54
KRH23169	Soybean	nucleus, plastid	40.28	45.45
PGSC0003DMT400055002	Potato	nucleus	42.81	43.99
Solyc01g006690.2.1	Tomato	nucleus	42.18	43.91
Zm00001d006025_P001	Maize	plastid	41.86	43.66
Bra008872.1-P	Field mustard	plastid	35.86	43.65
Bra023381.1-P	Field mustard	nucleus	32.39	43.62
CDX85683	Canola	nucleus	32.86	43.61
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	37.44	43.57
CDY53973	Canola	nucleus	37.28	43.46
TraesCS5B01G264800.2	Wheat	plastid	42.65	43.41
CDX91157	Canola	nucleus	32.54	43.28
TraesCS5A01G265200.2	Wheat	plastid	42.34	42.88
CDY55867	Canola	cytosol	36.49	42.7
AT5G12900.1	Thale cress	nucleus, plastid	37.76	42.53
TraesCS5D01G273100.1	Wheat	plastid	41.23	42.37
PGSC0003DMT400081474	Potato	cytosol	39.97	42.1
Bra006167.1-P	Field mustard	plastid	33.33	41.7
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	41.86	41.28
CDX70481	Canola	cytosol	34.76	40.74
Solyc01g014120.2.1	Tomato	cytosol, nucleus	15.96	29.36
GSMUA_Achr5P18790_001	Banana	mitochondrion	15.64	27.65
Solyc01g014380.2.1	Tomato	nucleus	12.8	26.56
GSMUA_Achr8P19390_001	Banana	plastid	15.96	25.38

Protein Annotations

EnsemblPlants:GSMUA_Achr7P02030_001	EnsemblPlants:GSMUA_Achr7T02030_001	EnsemblPlantsGene:GSMUA_Achr7G02030_001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3
SEG:seg	UniParc:UPI0002962CEF	UniProt:M0TDZ3	MapMan:35.1	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G02030_001]

Coordinates

chr7:+:1565517..1568983

Molecular Weight (calculated)

72820.3 Da

IEP (calculated)

8.958

GRAVY (calculated)

-0.350

Length

633 amino acids

Sequence
(BLAST)

001: MASSTASSQA HGTESDDIQA AIAKTAELRS LHAKLLQRRN LGGGPFVLGP PVGAASFLRH SNPHSTAEDY PVFTPSYEEE SLPGFHYIRP ETRSLSETWS
101: AIQVEGKNDA TINIDAQKNK QNICSRNEHL SKRSSCINHI SFLQASLVTD THISSSGRSS PGEHETIKKC NACKPVTISR EPEREHRNLK TVSSTTSLHD
201: TGTSKHVHTK HRGPVLSWLF PKSKRKPKPE MLPHPIESEE MSQFLNDWGL LSFESLKKEL LEANKNKDAA LAEVTKMRSL FGELQQKLVN LETYCEELKK
301: ALKQAAHVKS CQVTDRPNLP KRTKTSGCVK DELMPVSHEV MMEGFLQIVS EARLSIKQFS KMLIHHIEET ECDMMEKLNL LLQHQQMSSS KKHSKVMLYH
401: VEALINQCLY QDFENCIFQK NGSPKFLDPQ QERRENYLAF LALRNLSWNE VLHKGTKYYS KNFSMFCDQK MSCIALLLNW SRLWPEQLLQ CFFIAAKFIW
501: LLHLLAFSFS PPLMILRVDE NRIFDPLYME DILLDKKRAH IAAQVKIMVM PGFYIQDKVL KCRVLCESLS LAKCDRFFLR SIYGKMKTYV CFIIYSSYQS
601: IQCLQCFLIF LIKRVNLRTY CVRHKTPQWT ICW

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.