Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g048620.2.1 | |
| Solyc06g048950.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G12900.1 | Solyc06g048620.2.1 | AT3G56370.1 | 15618632 |
| AT5G12900.1 | Solyc06g048950.2.1 | AT3G56370.1 | 15618632 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67745 | Canola | plastid | 67.11 | 13.97 |
| GSMUA_Achr9P20170_001 | Banana | cytosol | 59.21 | 13.51 |
| VIT_06s0004g01680.t01 | Wine grape | cytosol | 81.58 | 10.49 |
| KRH23169 | Soybean | nucleus, plastid | 76.32 | 10.34 |
| CDX91157 | Canola | nucleus | 64.47 | 10.29 |
| CDX85683 | Canola | nucleus | 64.47 | 10.27 |
| Bra023381.1-P | Field mustard | nucleus | 63.16 | 10.21 |
| KRH10167 | Soybean | nucleus | 77.63 | 10.21 |
| Bra006167.1-P | Field mustard | plastid | 67.11 | 10.08 |
| Bra008872.1-P | Field mustard | plastid | 67.11 | 9.81 |
| Solyc01g006690.2.1 | Tomato | nucleus | 77.63 | 9.7 |
| KRH24675 | Soybean | nucleus | 75.0 | 9.68 |
| KRH29674 | Soybean | cytosol | 73.68 | 9.52 |
| CDX70481 | Canola | cytosol | 67.11 | 9.44 |
| CDY55867 | Canola | cytosol | 67.11 | 9.43 |
| CDY53973 | Canola | nucleus | 67.11 | 9.39 |
| AT5G12900.1 | Thale cress | nucleus, plastid | 67.11 | 9.07 |
| GSMUA_Achr9P27740_001 | Banana | cytosol, nucleus, peroxisome | 67.11 | 8.76 |
| GSMUA_Achr9P12540_001 | Banana | nucleus | 63.16 | 8.36 |
| HORVU5Hr1G073320.1 | Barley | nucleus | 57.89 | 8.35 |
| Os08t0508100-01 | Rice | plastid | 65.79 | 8.29 |
| GSMUA_Achr3P03800_001 | Banana | nucleus | 61.84 | 8.25 |
| EES14272 | Sorghum | plastid | 64.47 | 8.05 |
| GSMUA_Achr8P25600_001 | Banana | cytosol, nucleus, peroxisome | 64.47 | 7.7 |
| Zm00001d031444_P001 | Maize | plastid | 60.53 | 7.64 |
| Zm00001d020937_P001 | Maize | plastid | 57.89 | 7.51 |
| Zm00001d052889_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 59.21 | 7.48 |
| EER99087 | Sorghum | plastid | 56.58 | 7.29 |
| Zm00001d006025_P001 | Maize | plastid | 57.89 | 7.25 |
| TraesCS5B01G264800.2 | Wheat | plastid | 59.21 | 7.23 |
| TraesCS5D01G273100.1 | Wheat | plastid | 57.89 | 7.14 |
| TraesCS5A01G265200.2 | Wheat | plastid | 57.89 | 7.04 |
| Solyc08g079510.2.1 | Tomato | plastid | 43.42 | 6.98 |
| TraesCS7D01G244400.1 | Wheat | plastid | 53.95 | 6.9 |
| TraesCS7A01G245900.1 | Wheat | plastid | 53.95 | 6.87 |
| HORVU5Hr1G073290.4 | Barley | cytosol, nucleus, plastid | 57.89 | 6.85 |
| TraesCS7B01G145600.1 | Wheat | plastid | 53.95 | 6.84 |
| Os09t0488800-01 | Rice | plastid | 53.95 | 6.7 |
| GSMUA_Achr7P02030_001 | Banana | cytosol | 55.26 | 6.64 |
| HORVU7Hr1G050500.2 | Barley | endoplasmic reticulum | 19.74 | 2.76 |
| Solyc01g014120.2.1 | Tomato | cytosol, nucleus | 0.0 | 0.0 |
| Solyc01g014380.2.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc01g014110.2.1 | EnsemblPlantsGene:Solyc01g014110.2 | PANTHER:PTHR31029 | PANTHER:PTHR31029:SF3 | SignalP:SignalP-noTM | UniParc:UPI00027622ED |
| UniProt:K4AU48 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:11642471..11642875
Molecular Weight (calculated)
8868.9 Da
IEP (calculated)
9.682
GRAVY (calculated)
-0.107
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MCIWLLHLLA FSFNPPLGIL RVEENTSFDK NYMEDIFGDR QKSQGTSKVK IMVVPGFYVR DRVHRCKVIC RYKSAA
001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
Arabidopsis Description
IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.