Factsheet for HORVU5Hr1G073320.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G081050.3
HORVU4Hr1G050250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	HORVU3Hr1G081050.3	AT3G56370.1	15618632
AT5G12900.1	HORVU4Hr1G050250.1	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	97.91	80.37
TraesCS5D01G273100.1	Wheat	plastid	92.03	78.73
TraesCS5B01G264800.2	Wheat	plastid	91.27	77.33
TraesCS5A01G265200.2	Wheat	plastid	91.65	77.28
EER99087	Sorghum	plastid	67.55	60.34
Zm00001d020937_P001	Maize	plastid	65.84	59.22
Os09t0488800-01	Rice	plastid	67.36	58.01
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	8.35	57.89
Zm00001d006025_P001	Maize	plastid	65.65	57.0
GSMUA_Achr9P20170_001	Banana	cytosol	35.86	56.76
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	50.66	49.08
CDY67745	Canola	plastid	33.78	48.77
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	50.85	46.05
GSMUA_Achr3P03800_001	Banana	nucleus	47.63	44.04
GSMUA_Achr9P12540_001	Banana	nucleus	47.82	43.9
VIT_06s0004g01680.t01	Wine grape	cytosol	47.82	42.64
KRH10167	Soybean	nucleus	45.73	41.7
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	49.72	41.2
KRH24675	Soybean	nucleus	45.92	41.09
CDX85683	Canola	nucleus	36.81	40.67
Bra023381.1-P	Field mustard	nucleus	36.05	40.43
KRH29674	Soybean	cytosol	44.97	40.31
KRH23169	Soybean	nucleus, plastid	42.69	40.11
PGSC0003DMT400081474	Potato	cytosol	45.35	39.77
CDX91157	Canola	nucleus	35.86	39.71
Solyc01g006690.2.1	Tomato	nucleus	45.16	39.14
PGSC0003DMT400055002	Potato	nucleus	45.35	38.8
Bra006167.1-P	Field mustard	plastid	37.0	38.54
Bra008872.1-P	Field mustard	plastid	37.95	38.46
GSMUA_Achr7P02030_001	Banana	cytosol	45.54	37.91
CDY53973	Canola	nucleus	38.71	37.57
AT5G12900.1	Thale cress	nucleus, plastid	39.85	37.37
CDY55867	Canola	cytosol	38.14	37.15
CDX70481	Canola	cytosol	36.24	35.37
Solyc01g014120.2.1	Tomato	cytosol, nucleus	15.37	23.55
Solyc01g014380.2.1	Tomato	nucleus	10.82	18.69
HORVU4Hr1G063050.1	Barley	mitochondrion	8.73	17.42

Protein Annotations

EnsemblPlants:HORVU5Hr1G073320.1	EnsemblPlantsGene:HORVU5Hr1G073320	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF5	SEG:seg
UniParc:UPI000294A080	UniProt:M0YAP9	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:538329324..538330907

Molecular Weight (calculated)

58576.2 Da

IEP (calculated)

7.581

GRAVY (calculated)

-0.463

Length

527 amino acids

Sequence
(BLAST)

001: MVQTYDEEPM AMAAGLNDIC HDNRSRSENW GGITLDRGGD EAAYSDYDDC INGFSSSNSD FHYAAPSSSE NHLRSRGVNR IHPAFLQSAP LAGRFPASTG
101: RNAEFKVPSS CGGAFRPATI GRDHGGSEAE ALRFLSSSSR VPFSSSHQPP ASAHSRAKQR GSQILSWLFA KAKKKPKPET PPPSSAVIER GNMSQLLKEW
201: GLLSLDSLRK ELAEANAHRD AAQEDAAEMR SSLGELTTKM MSLEAYCSEL KKALRQATDH NGGTDTQSHS RRSSSRSIGA SRELPGDGMP VSHEAMVEGF
301: LQIASEARLS VKQLCKALIQ QVEEPDNGLS DKLNLLLQPH QLAIAGRHCS KAVLYHLEAI MNQTLYQEFE NPSFQRNGAA RHLDPGQDRR ESFASFVALR
401: NLSWSEVLRK GTRYYSEDLS RFCDQKMSCV VAALSWSWPW PEQLLQCFFV ATKCVWLLHL LAFSFAPPLP ILRVDDGRAF DQAYMEDILP DRRQTQDLLP
501: LRVKIMVMPG FYVQDRVLKC KVLTTHS

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.