CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH53723
KRH64211

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	KRH53723	AT3G56370.1	15618632
AT5G12900.1	KRH64211	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29674	Soybean	cytosol	93.38	93.54
KRH10167	Soybean	nucleus	74.02	75.43
KRH23169	Soybean	nucleus, plastid	71.65	75.22
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	9.68	75.0
VIT_06s0004g01680.t01	Wine grape	cytosol	73.51	73.27
CDY67745	Canola	plastid	39.05	63.01
PGSC0003DMT400081474	Potato	cytosol	63.84	62.56
PGSC0003DMT400055002	Potato	nucleus	65.2	62.34
Solyc01g006690.2.1	Tomato	nucleus	63.84	61.84
GSMUA_Achr9P20170_001	Banana	cytosol	34.3	60.66
Bra023381.1-P	Field mustard	nucleus	43.8	54.89
CDX85683	Canola	nucleus	44.14	54.51
CDX91157	Canola	nucleus	43.97	54.41
Bra008872.1-P	Field mustard	plastid	46.52	52.69
CDY53973	Canola	nucleus	48.56	52.67
CDY55867	Canola	cytosol	48.05	52.31
AT5G12900.1	Thale cress	nucleus, plastid	49.75	52.14
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	51.1	51.72
Bra006167.1-P	Field mustard	plastid	44.31	51.58
GSMUA_Achr3P03800_001	Banana	nucleus	49.58	51.23
GSMUA_Achr9P12540_001	Banana	nucleus	49.41	50.7
CDX70481	Canola	cytosol	46.01	50.19
Os08t0508100-01	Rice	plastid	49.58	48.42
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	50.93	47.17
TraesCS7D01G244400.1	Wheat	plastid	47.37	46.97
EES14272	Sorghum	plastid	48.39	46.8
TraesCS7A01G245900.1	Wheat	plastid	47.37	46.73
Solyc01g014380.2.1	Tomato	nucleus	24.11	46.56
Solyc01g014120.2.1	Tomato	cytosol, nucleus	27.16	46.51
TraesCS7B01G145600.1	Wheat	plastid	47.2	46.41
HORVU5Hr1G073320.1	Barley	nucleus	41.09	45.92
Os09t0488800-01	Rice	plastid	47.2	45.42
EER99087	Sorghum	plastid	45.33	45.25
Zm00001d020937_P001	Maize	plastid	44.99	45.22
Zm00001d031444_P001	Maize	plastid	45.5	44.52
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	45.5	44.52
TraesCS5B01G264800.2	Wheat	plastid	46.52	44.05
TraesCS5D01G273100.1	Wheat	plastid	46.01	43.99
Zm00001d006025_P001	Maize	plastid	44.99	43.66
GSMUA_Achr7P02030_001	Banana	cytosol	46.86	43.6
TraesCS5A01G265200.2	Wheat	plastid	46.01	43.36
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	46.35	42.52
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	36.5	39.52
KRH60459	Soybean	nucleus	25.47	34.01
KRH41761	Soybean	plastid	26.49	31.64

Protein Annotations

EMBL:ACUP02007180	EnsemblPlants:KRH24675	EnsemblPlantsGene:GLYMA_12G055100	EntrezGene:100814681	ncoils:Coil	PANTHER:PTHR31029
PANTHER:PTHR31029:SF3	ProteinID:KRH24675	ProteinID:KRH24675.1	UniParc:UPI000233C296	UniProt:I1LQH0	MapMan:35.1

Description

hypothetical protein

Coordinates

chr12:-:3988442..3991287

Molecular Weight (calculated)

66364.6 Da

IEP (calculated)

7.747

GRAVY (calculated)

-0.512

Length

589 amino acids

Sequence
(BLAST)

001: MAATTATSAQ VSKDYKDSNN GNPEITRQEI QAAIAKAVEL RALHAALMRG NSPANARFPS PSPASGPVSH FSAQDYPVFT PSYEDDSMVG YTQNSMKSLT
101: VSESWDGSVL EGGNSVENIV AYYKGKSSSR KGLYAGFANL ESHICPTEDT KSVTGSSANQ ITVLQTSPAN DDFFKCRRRN SMEDFKSASS CNKCNPATLT
201: SEFENARNSK SSNIVVPVTD SHSSLQSQPK SKGVISWLFP RLKKKHKNEN SPNRAESEDV SQVLKDLGIM SIETLKKELV EANENRDVAL MEVSEMRSSL
301: GELKQKLEYL ESYCEELKKA LKQAMQTRDS QPCDQLSSLP QRGKSFEGNG ENLMPVSEEV MVEGFLQIVS ESRLSVKQFC KTLINHIEET DHSLTENLNL
401: LLQPYKLSLN SKYSKAVLYH FEAFINQFLY QDFENCVFQK NGCSKFLDPQ QDRQAQFSSF VALRNLSWSE VLRKGTKYYS EEFSKFCDQK MSCINTSLKW
501: TRPWPEQLLQ AFFVAAKCMW LLHLLAFSFN PPLGILRVEE NKTFDPQYME DMCPRSQGPS RVKIMVMPGF YVQDRVLRCK VLCRYKSAA

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.