CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72142
CDY27220

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	CDX72142	AT3G56370.1	15618632
AT5G12900.1	CDY27220	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55867	Canola	cytosol	95.03	95.38
Bra008872.1-P	Field mustard	plastid	89.5	93.46
CDY67745	Canola	plastid	55.8	83.01
CDX85683	Canola	nucleus	69.61	79.25
CDX91157	Canola	nucleus	68.69	78.36
AT5G12900.1	Thale cress	nucleus, plastid	78.45	75.8
CDX70481	Canola	cytosol	73.66	74.07
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	9.39	67.11
GSMUA_Achr9P20170_001	Banana	cytosol	31.86	51.95
KRH10167	Soybean	nucleus	52.67	49.48
VIT_06s0004g01680.t01	Wine grape	cytosol	53.59	49.24
KRH24675	Soybean	nucleus	52.67	48.56
KRH23169	Soybean	nucleus, plastid	50.09	48.48
CDY19343	Canola	cytosol	9.58	48.15
KRH29674	Soybean	cytosol	51.75	47.79
PGSC0003DMT400055002	Potato	nucleus	52.3	46.1
Solyc01g006690.2.1	Tomato	nucleus	51.38	45.89
PGSC0003DMT400081474	Potato	cytosol	49.17	44.43
GSMUA_Achr3P03800_001	Banana	nucleus	44.57	42.46
GSMUA_Achr9P12540_001	Banana	nucleus	44.2	41.81
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	44.2	41.24
Os08t0508100-01	Rice	plastid	44.38	39.97
EES14272	Sorghum	plastid	44.01	39.24
TraesCS7B01G145600.1	Wheat	plastid	43.28	39.23
TraesCS7D01G244400.1	Wheat	plastid	42.91	39.23
TraesCS7A01G245900.1	Wheat	plastid	42.73	38.86
HORVU5Hr1G073320.1	Barley	nucleus	37.57	38.71
EER99087	Sorghum	plastid	41.25	37.97
Os09t0488800-01	Rice	plastid	42.73	37.91
Zm00001d020937_P001	Maize	plastid	40.88	37.88
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	44.2	37.74
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	41.8	37.71
Zm00001d031444_P001	Maize	plastid	41.62	37.54
GSMUA_Achr7P02030_001	Banana	cytosol	43.46	37.28
Zm00001d006025_P001	Maize	plastid	41.25	36.9
TraesCS5D01G273100.1	Wheat	plastid	41.44	36.53
TraesCS5B01G264800.2	Wheat	plastid	41.07	35.85
TraesCS5A01G265200.2	Wheat	plastid	41.25	35.84
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	34.81	34.74
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	40.88	34.58
Solyc01g014120.2.1	Tomato	cytosol, nucleus	19.89	31.4
CDY31261	Canola	nucleus, plastid	27.26	30.96
CDY21046	Canola	nucleus, plastid	25.23	30.93
CDX98071	Canola	nucleus, plastid	25.05	29.37
CDY53856	Canola	cytosol, plastid	16.94	29.11
Solyc01g014380.2.1	Tomato	nucleus	16.02	28.52
CDY30072	Canola	nucleus, plastid	26.34	27.82

Protein Annotations

EnsemblPlants:CDY53973	EnsemblPlantsGene:GSBRNA2T00011837001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3	ProteinID:CDY53973
ProteinID:CDY53973.1	SEG:seg	UniParc:UPI0004EEB6E8	UniProt:A0A078IY89	MapMan:35.1	:

Description

BnaA10g30050DBnaA10g30050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IY89]

Coordinates

chrLK033258:-:45628..48024

Molecular Weight (calculated)

61715.0 Da

IEP (calculated)

8.579

GRAVY (calculated)

-0.597

Length

543 amino acids

Sequence
(BLAST)

001: MASSETKMNK GREKEEAIAN GVKMRALQAG LMQKSSPSST YNSIRIPSSS SPASRPLPNL SAHDYPVFTP SYEDEPVSAF HHKNLTLSET WDESGVGLVE
101: GDEEQDLKHT YHSDSYKTST SRKTLTPQQD SHVYTISVSS CNEYKQRGFD TKSLKSSNLV VPLTDSHSVV VASQTRNRGG RVMSWLFPKL KRKQKSSNSI
201: FNSPSRTERS EEVSHEVLKD SGSSGVEKLK RELIEANRSR DAALTQVEEM KSSLGEFNEK LQYLESYCDS LKKALRQATE VVSQENSNKA VKKTNSEMPV
301: SEEVMVEGFL QIVSESRLSI KQFLKTLVTE IDEEDSTLMS NINTLLQPYN LSFTSKYSKI IQYHLESIIS QTIYQDFENC VFQKNGKPKL LDPEQERQAN
401: FSSFASLRNL SWNEVLKKGT KYYSEEFSSF CDEKMSLIIA TLKWTRPWSE QMLQAFFVAA KCVWLLHLLA FSFRPALGIL RVEENRVFES SYMEDMGGGD
501: RERMQRSSAS RGQGRVKVMV MPGFYIQDRV LRCKVLCRYK SLG

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.