Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P29680_001 | |
| GSMUA_Achr6P32490_001 | |
| GSMUA_Achr9P04820_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G12900.1 | GSMUA_Achr5P29680_001 | AT3G56370.1 | 15618632 |
| AT5G12900.1 | GSMUA_Achr6P32490_001 | AT3G56370.1 | 15618632 |
| AT5G12900.1 | GSMUA_Achr9P04820_001 | AT3G56370.1 | 15618632 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g014110.2.1 | Tomato | endoplasmic reticulum, extracellular | 13.51 | 59.21 |
| CDY67745 | Canola | plastid | 51.05 | 46.58 |
| GSMUA_Achr9P27740_001 | Banana | cytosol, nucleus, peroxisome | 74.77 | 42.78 |
| GSMUA_Achr3P03800_001 | Banana | nucleus | 67.57 | 39.47 |
| GSMUA_Achr9P12540_001 | Banana | nucleus | 64.86 | 37.63 |
| GSMUA_Achr8P25600_001 | Banana | cytosol, nucleus, peroxisome | 69.97 | 36.64 |
| HORVU5Hr1G073320.1 | Barley | nucleus | 56.76 | 35.86 |
| Os08t0508100-01 | Rice | plastid | 63.36 | 34.99 |
| VIT_06s0004g01680.t01 | Wine grape | cytosol | 61.26 | 34.52 |
| CDX91157 | Canola | nucleus | 49.25 | 34.45 |
| KRH10167 | Soybean | nucleus | 59.76 | 34.43 |
| KRH24675 | Soybean | nucleus | 60.66 | 34.3 |
| Bra023381.1-P | Field mustard | nucleus | 48.35 | 34.26 |
| CDX85683 | Canola | nucleus | 48.95 | 34.17 |
| EES14272 | Sorghum | plastid | 62.16 | 33.99 |
| KRH29674 | Soybean | cytosol | 59.76 | 33.84 |
| Zm00001d031444_P001 | Maize | plastid | 60.66 | 33.55 |
| TraesCS7A01G245900.1 | Wheat | plastid | 60.06 | 33.5 |
| TraesCS7D01G244400.1 | Wheat | plastid | 59.46 | 33.33 |
| Bra008872.1-P | Field mustard | plastid | 51.95 | 33.27 |
| Bra006167.1-P | Field mustard | plastid | 50.45 | 33.2 |
| GSMUA_Achr7P02030_001 | Banana | cytosol | 62.76 | 33.02 |
| TraesCS7B01G145600.1 | Wheat | plastid | 59.16 | 32.89 |
| KRH23169 | Soybean | nucleus, plastid | 55.26 | 32.8 |
| Zm00001d020937_P001 | Maize | plastid | 57.66 | 32.76 |
| EER99087 | Sorghum | plastid | 57.96 | 32.71 |
| PGSC0003DMT400055002 | Potato | nucleus | 60.06 | 32.47 |
| AT5G12900.1 | Thale cress | nucleus, plastid | 54.35 | 32.21 |
| Solyc01g006690.2.1 | Tomato | nucleus | 58.56 | 32.07 |
| PGSC0003DMT400081474 | Potato | cytosol | 57.66 | 31.95 |
| CDY53973 | Canola | nucleus | 51.95 | 31.86 |
| HORVU7Hr1G050500.2 | Barley | endoplasmic reticulum | 51.95 | 31.8 |
| Zm00001d052889_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 57.36 | 31.73 |
| CDY55867 | Canola | cytosol | 51.05 | 31.42 |
| Zm00001d006025_P001 | Maize | plastid | 57.06 | 31.3 |
| Os09t0488800-01 | Rice | plastid | 57.36 | 31.21 |
| CDX70481 | Canola | cytosol | 49.85 | 30.74 |
| TraesCS5D01G273100.1 | Wheat | plastid | 56.76 | 30.68 |
| TraesCS5A01G265200.2 | Wheat | plastid | 56.76 | 30.24 |
| TraesCS5B01G264800.2 | Wheat | plastid | 56.16 | 30.06 |
| GSMUA_Achr5P18790_001 | Banana | mitochondrion | 31.83 | 29.61 |
| HORVU5Hr1G073290.4 | Barley | cytosol, nucleus, plastid | 56.76 | 29.44 |
| GSMUA_Achr8P19390_001 | Banana | plastid | 30.33 | 25.38 |
| Solyc01g014120.2.1 | Tomato | cytosol, nucleus | 12.61 | 12.21 |
| Solyc01g014380.2.1 | Tomato | nucleus | 6.01 | 6.56 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P20170_001 | EnsemblPlants:GSMUA_Achr9T20170_001 | EnsemblPlantsGene:GSMUA_Achr9G20170_001 | ncoils:Coil | PANTHER:PTHR31029 | PANTHER:PTHR31029:SF3 |
| SEG:seg | UniParc:UPI00029665F5 | UniProt:M0U1X6 | MapMan:35.1 | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G20170_001]
Coordinates
chr9:-:23546595..23547596
Molecular Weight (calculated)
38335.2 Da
IEP (calculated)
7.542
GRAVY (calculated)
-0.290
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLLKEWGV SSLESLEEEL LHAKENRDAA LAEVSEMKSL LAELQQKLHS LEAYCEELKK ALKQAVHGKS PQVLYKFKLS KRVKSIRGSR DDLMPVSQEV
101: LVEGFLQIVS ECRLSVTHFC ETLIHQTRET DDDLSGRLNL LLQPHQMTLT SSNSSKVALC HLEAIVNQSL YQDFENCVFQ KNGSPKFLDP RRERQENFSS
201: FVALRNLGWN EVLHKGTKHY SDDFSRFCDR KFSSVAAVLN WSTPWPEHLL RCFLIGAKCI WLLHLLAFSF EPSLMILRVE GNRDFDPIHM EEIPLDGHRA
301: QAPARVRTMV MPGFFVRDRV LRCRVLCRYG SES
101: LVEGFLQIVS ECRLSVTHFC ETLIHQTRET DDDLSGRLNL LLQPHQMTLT SSNSSKVALC HLEAIVNQSL YQDFENCVFQ KNGSPKFLDP RRERQENFSS
201: FVALRNLGWN EVLHKGTKHY SDDFSRFCDR KFSSVAAVLN WSTPWPEHLL RCFLIGAKCI WLLHLLAFSF EPSLMILRVE GNRDFDPIHM EEIPLDGHRA
301: QAPARVRTMV MPGFFVRDRV LRCRVLCRYG SES
001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG
Arabidopsis Description
Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.