Factsheet for GSMUA_Achr5P18790_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19390_001	Banana	plastid	63.41	57.04
CDY19343	Canola	cytosol	14.53	48.15
TraesCS4D01G224300.1	Wheat	peroxisome, plastid	45.53	37.47
Zm00001d028423_P001	Maize	plastid	44.97	37.44
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	45.53	37.3
Zm00001d047916_P001	Maize	plastid	44.69	37.3
TraesCS4B01G224000.1	Wheat	plastid	44.69	36.12
Os03t0249100-01	Rice	plasma membrane	44.69	35.96
KXG39773	Sorghum	cytosol, nucleus, plastid	43.85	35.76
GSMUA_Achr9P20170_001	Banana	cytosol	29.61	31.83
KRH60459	Soybean	nucleus	39.11	31.75
KRH41761	Soybean	plastid	41.9	30.43
VIT_02s0241g00060.t01	Wine grape	plastid	40.22	30.25
PGSC0003DMT400010099	Potato	plastid	39.94	29.98
Solyc08g079510.2.1	Tomato	plastid	38.83	29.39
CDX98071	Canola	nucleus, plastid	37.99	29.37
CDY21046	Canola	nucleus, plastid	35.47	28.67
CDY53856	Canola	cytosol, plastid	25.14	28.48
CDY31261	Canola	nucleus, plastid	36.87	27.62
Bra019759.1-P	Field mustard	plastid	38.83	27.31
AT1G12330.1	Thale cress	nucleus	37.99	26.93
Bra016777.1-P	Field mustard	nucleus, plastid	36.59	26.46
CDY30072	Canola	nucleus, plastid	37.43	26.07
HORVU4Hr1G063050.1	Barley	mitochondrion	17.32	23.48
Bra028382.1-P	Field mustard	cytosol	22.35	23.39
GSMUA_Achr9P12540_001	Banana	nucleus	30.73	19.16
GSMUA_Achr3P03800_001	Banana	nucleus	30.45	19.12
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	30.45	18.73
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	30.45	17.14
GSMUA_Achr7P02030_001	Banana	cytosol	27.65	15.64

Protein Annotations

EnsemblPlants:GSMUA_Achr5P18790_001	EnsemblPlants:GSMUA_Achr5T18790_001	EnsemblPlantsGene:GSMUA_Achr5G18790_001	ncoils:Coil	PANTHER:PTHR31029	SEG:seg
UniParc:UPI0002963E1F	UniProt:M0SZQ8	MapMan:35.1	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G18790_001]

Coordinates

chr5:-:20304219..20305474

Molecular Weight (calculated)

39726.7 Da

IEP (calculated)

9.487

GRAVY (calculated)

-0.182

Length

358 amino acids

Sequence
(BLAST)

001: MVSSSPSLRG LRSLFLSLTG RSPAAASATP VSDVHEDQWR LAAAELSRKL VHATRKRDEA LVEASRLKYS LAELERKVER LESHCRDLGA ALQPGPATGL
101: PPSSAPFTAE AFHLAIAEAH TAVRHLARSL ISQWRRNPSG LLFYMEALLN RVLYAGFEED DEEESDLIDP AARCEASRTG YEAVRGLGWD EVLSKGTRHY
201: SVGLSRFCDR KMSEVVAMVG RTRPWPEGLL QAFFGSAKGA WVVRLMARSV HPAIPTLRAN RGARFDGRFM EDVAADRVKR LTPVGVRMMV APGFHVYTGG
301: VVKCKVLCVY NSGNTECSID SCSGRNTSER PQQQKRQSIF RKCFCFQLAL VFFLLFSF

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.