CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019759.1-P	Field mustard	plastid	88.52	89.39
CDX98071	Canola	nucleus, plastid	79.77	88.55
AT1G12330.1	Thale cress	nucleus	82.88	84.36
CDY19343	Canola	cytosol	17.7	84.26
CDY31261	Canola	nucleus, plastid	73.35	78.87
CDY21046	Canola	nucleus, plastid	66.54	77.2
CDY53856	Canola	cytosol, plastid	38.33	62.34
VIT_02s0241g00060.t01	Wine grape	plastid	50.19	54.2
KRH60459	Soybean	nucleus	45.53	53.06
KRH41761	Soybean	plastid	49.61	51.72
PGSC0003DMT400010099	Potato	plastid	45.53	49.06
Solyc08g079510.2.1	Tomato	plastid	44.75	48.63
TraesCS4D01G224300.1	Wheat	peroxisome, plastid	32.88	38.85
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	32.49	38.22
Zm00001d047916_P001	Maize	plastid	31.71	38.0
Zm00001d028423_P001	Maize	plastid	31.71	37.91
Os03t0249100-01	Rice	plasma membrane	32.68	37.75
TraesCS4B01G224000.1	Wheat	plastid	32.49	37.7
GSMUA_Achr8P19390_001	Banana	plastid	29.18	37.69
GSMUA_Achr5P18790_001	Banana	mitochondrion	26.07	37.43
KXG39773	Sorghum	cytosol, nucleus, plastid	30.74	35.99
CDY67745	Canola	plastid	25.29	35.62
CDX91157	Canola	nucleus	27.04	29.2
CDX85683	Canola	nucleus	26.85	28.93
CDX70481	Canola	cytosol	28.4	27.04
HORVU4Hr1G063050.1	Barley	mitochondrion	13.81	26.89
CDY53973	Canola	nucleus	27.82	26.34
CDY55867	Canola	cytosol	27.24	25.88

Protein Annotations

EnsemblPlants:CDY30072	EnsemblPlantsGene:GSBRNA2T00044625001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF4	ProteinID:CDY30072
ProteinID:CDY30072.1	SEG:seg	UniParc:UPI0004EE11DB	UniProt:A0A078GXZ3	MapMan:35.1	:

Description

BnaC05g09480DBnaC05g09480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXZ3]

Coordinates

chrLK032248:+:399579..401795

Molecular Weight (calculated)

57992.2 Da

IEP (calculated)

8.690

GRAVY (calculated)

-0.617

Length

514 amino acids

Sequence
(BLAST)

001: MAPSSSSSPS KSPVPSLHPS LHFTPIPECE EDDFHEERYK NRATPSSDGG SSATPSRHRH HRRSDENYQH TLTPLHHNGN RKRHDSSDDE YGGAVSCNKC
101: RPHHSHREKF SVVPLESHHH NNNNNPSFIS SPNLIIKSIF QSLTRRSPKP SSAAASSLPP RSSSSSASAS AADASREEQW RLAVAELSHK LIQATKKKED
201: AVVEASRLKT SMSELEKKLN KLEIYCHNLK SGLDECSNNN KKQNVPVRKD TFNDRIIQQF LVSVSESRSS IRALSRALAS QLRTVGGKVY ERLSLLLQPF
301: DVKINSFAKN PKSLIFYLEA ILSRAFFEDF EASGFQKNGS TRILNPIDRC ESNYASFNVL MELTWDEVLS RGTKHFSEEF SRFCDRKMSD VVSMLCWNRA
401: WPEPLLQAFF GASKSVWLVH LLANSVNPGL QIFRVEKDDR FDPVYMEETG GDRYKSVVRA MVQPGFYVYG SVVKCKVVCK HCGSDEEEVV EDRVVKECNK
501: NDKSLISICS PLRV

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.