Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G12900.1 | CDX72142 | AT3G56370.1 | 15618632 |
| AT5G12900.1 | CDY27220 | AT3G56370.1 | 15618632 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67745 | Canola | plastid | 65.0 | 96.16 |
| Bra006167.1-P | Field mustard | plastid | 84.07 | 89.72 |
| CDX85683 | Canola | nucleus | 66.11 | 74.84 |
| CDY53973 | Canola | nucleus | 74.07 | 73.66 |
| CDX91157 | Canola | nucleus | 64.44 | 73.11 |
| CDY55867 | Canola | cytosol | 73.15 | 73.01 |
| AT5G12900.1 | Thale cress | nucleus, plastid | 71.48 | 68.68 |
| Solyc01g014110.2.1 | Tomato | endoplasmic reticulum, extracellular | 9.44 | 67.11 |
| GSMUA_Achr9P20170_001 | Banana | cytosol | 30.74 | 49.85 |
| CDY19343 | Canola | cytosol | 9.44 | 47.22 |
| VIT_06s0004g01680.t01 | Wine grape | cytosol | 50.93 | 46.53 |
| KRH10167 | Soybean | nucleus | 49.26 | 46.02 |
| KRH24675 | Soybean | nucleus | 50.19 | 46.01 |
| KRH23169 | Soybean | nucleus, plastid | 47.22 | 45.45 |
| KRH29674 | Soybean | cytosol | 49.26 | 45.24 |
| Solyc01g006690.2.1 | Tomato | nucleus | 49.81 | 44.24 |
| PGSC0003DMT400055002 | Potato | nucleus | 50.0 | 43.83 |
| GSMUA_Achr3P03800_001 | Banana | nucleus | 43.7 | 41.4 |
| PGSC0003DMT400081474 | Potato | cytosol | 45.74 | 41.1 |
| GSMUA_Achr9P27740_001 | Banana | cytosol, nucleus, peroxisome | 43.33 | 40.21 |
| GSMUA_Achr9P12540_001 | Banana | nucleus | 41.85 | 39.37 |
| Os08t0508100-01 | Rice | plastid | 42.22 | 37.81 |
| TraesCS7D01G244400.1 | Wheat | plastid | 41.11 | 37.37 |
| Zm00001d020937_P001 | Maize | plastid | 40.56 | 37.37 |
| EER99087 | Sorghum | plastid | 40.56 | 37.12 |
| EES14272 | Sorghum | plastid | 41.85 | 37.11 |
| TraesCS7A01G245900.1 | Wheat | plastid | 40.93 | 37.02 |
| TraesCS7B01G145600.1 | Wheat | plastid | 40.74 | 36.73 |
| GSMUA_Achr8P25600_001 | Banana | cytosol, nucleus, peroxisome | 42.96 | 36.48 |
| Os09t0488800-01 | Rice | plastid | 41.11 | 36.27 |
| HORVU5Hr1G073320.1 | Barley | nucleus | 35.37 | 36.24 |
| Zm00001d031444_P001 | Maize | plastid | 40.37 | 36.21 |
| Zm00001d006025_P001 | Maize | plastid | 40.56 | 36.08 |
| Zm00001d052889_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 39.44 | 35.38 |
| TraesCS5D01G273100.1 | Wheat | plastid | 40.0 | 35.06 |
| TraesCS5B01G264800.2 | Wheat | plastid | 40.19 | 34.89 |
| GSMUA_Achr7P02030_001 | Banana | cytosol | 40.74 | 34.76 |
| TraesCS5A01G265200.2 | Wheat | plastid | 39.81 | 34.4 |
| HORVU5Hr1G073290.4 | Barley | cytosol, nucleus, plastid | 39.26 | 33.02 |
| HORVU7Hr1G050500.2 | Barley | endoplasmic reticulum | 32.59 | 32.35 |
| CDY21046 | Canola | nucleus, plastid | 25.19 | 30.7 |
| CDY31261 | Canola | nucleus, plastid | 26.85 | 30.33 |
| CDX98071 | Canola | nucleus, plastid | 25.0 | 29.16 |
| CDY30072 | Canola | nucleus, plastid | 27.04 | 28.4 |
| CDY53856 | Canola | cytosol, plastid | 16.48 | 28.16 |
| Solyc01g014120.2.1 | Tomato | cytosol, nucleus | 16.67 | 26.16 |
| Solyc01g014380.2.1 | Tomato | nucleus | 13.33 | 23.61 |
Protein Annotations
| EnsemblPlants:CDX70481 | EnsemblPlantsGene:GSBRNA2T00140309001 | ncoils:Coil | PANTHER:PTHR31029 | PANTHER:PTHR31029:SF3 | ProteinID:CDX70481 |
| ProteinID:CDX70481.1 | SEG:seg | UniParc:UPI0004EC7D57 | MapMan:35.1 | : | : |
Description
BnaC03g05650D
Coordinates
chrLK031791:-:641265..643387
Molecular Weight (calculated)
61677.6 Da
IEP (calculated)
7.273
GRAVY (calculated)
-0.614
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSETRMKN GREKEEAIAN GVKVRSLQAG FMQKSSPSST YSIRIPSSCS ASRPLPNLSA HDYPVFTPSY EDEPASTYYH KNLTLSEHWD ESDVGLVEGD
101: EDQDLRHTYH SDSYKTSASR NTSTPQQDSH HHHQSHVYTM SDALRSPPLH FCTSARSNCG SVSSCNEYKQ RGFDTMSLNN SNLVVPLTDS HSVVVSSHPR
201: NRGGRVMSWL FPKSKRNPNR TDISEEVFKD SGSDIEKLKR ELMEANRSRE AALTQVSEMR TSLGEFNEKL QYLESYCVGL KKALREAVSR EKNSEMMPVS
301: EDVMVEGFLQ IVSESRLSIK QFLKTLVTEI DEEDSNLISN INALLRPHNL SFTSKHSKTI QYHLEAIISQ SVHQDFENCV FQKNGKPKLL DQEQERQANF
401: SSFASLRNLS WSEVLKKGTK YYSEEFSSFC DEKMSLIITT LKWTRPWSEE MLQAFFVAAK CVWLLHLLAF SFKPALGILR VEENREFETS YMEDMGADRD
501: RQRSLASRGP AWVKVMVMPG FYVQDRVLRC KVLCRYKSLG
101: EDQDLRHTYH SDSYKTSASR NTSTPQQDSH HHHQSHVYTM SDALRSPPLH FCTSARSNCG SVSSCNEYKQ RGFDTMSLNN SNLVVPLTDS HSVVVSSHPR
201: NRGGRVMSWL FPKSKRNPNR TDISEEVFKD SGSDIEKLKR ELMEANRSRE AALTQVSEMR TSLGEFNEKL QYLESYCVGL KKALREAVSR EKNSEMMPVS
301: EDVMVEGFLQ IVSESRLSIK QFLKTLVTEI DEEDSNLISN INALLRPHNL SFTSKHSKTI QYHLEAIISQ SVHQDFENCV FQKNGKPKLL DQEQERQANF
401: SSFASLRNLS WSEVLKKGTK YYSEEFSSFC DEKMSLIITT LKWTRPWSEE MLQAFFVAAK CVWLLHLLAF SFKPALGILR VEENREFETS YMEDMGADRD
501: RQRSLASRGP AWVKVMVMPG FYVQDRVLRC KVLCRYKSLG
001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
Arabidopsis Description
IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.