CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70481
CDX85683
CDX91157
CDY53973
CDY55867
CDY67745

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56370.1	CDX70481	AT5G12900.1	15618632
AT3G56370.1	CDX85683	AT5G12900.1	15618632
AT3G56370.1	CDX91157	AT5G12900.1	15618632
AT3G56370.1	CDY53973	AT5G12900.1	15618632
AT3G56370.1	CDY55867	AT5G12900.1	15618632
AT3G56370.1	CDY67745	AT5G12900.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27220	Canola	plasma membrane	97.33	97.33
AT3G56370.1	Thale cress	plasma membrane	89.0	86.41
PGSC0003DMT400042952	Potato	plasma membrane	63.46	66.44
Solyc06g048950.2.1	Tomato	plasma membrane	62.93	65.88
KRH53723	Soybean	plasma membrane	67.63	64.72
KRH64211	Soybean	plasma membrane	67.41	64.52
VIT_13s0067g03050.t01	Wine grape	plasma membrane	69.55	62.6
PGSC0003DMT400070944	Potato	plasma membrane	64.1	61.92
Solyc06g048620.2.1	Tomato	plasma membrane	63.89	61.59
GSMUA_Achr6P32490_001	Banana	plasma membrane	49.47	60.44
GSMUA_Achr9P04820_001	Banana	plasma membrane	50.43	60.36
GSMUA_Achr5P29680_001	Banana	plasma membrane	47.97	59.95
TraesCS4D01G172000.1	Wheat	plasma membrane	60.79	58.48
HORVU4Hr1G050250.1	Barley	plasma membrane	60.47	58.17
TraesCS4A01G135200.1	Wheat	plasma membrane	60.36	58.07
Os01t0821900-01	Rice	peroxisome, plasma membrane	47.97	57.94
EER94903	Sorghum	plasma membrane	60.15	57.92
TraesCS4B01G169900.1	Wheat	plasma membrane	60.26	57.79
Os03t0335500-01	Rice	plasma membrane	59.72	57.57
CDY04822	Canola	plasma membrane	56.94	57.44
Zm00001d029059_P001	Maize	plasma membrane	59.4	57.2
Os05t0478300-01	Rice	plasma membrane, plastid, vacuole	47.01	55.91
HORVU3Hr1G081050.3	Barley	plastid	49.36	55.07
EES03806	Sorghum	plasma membrane	55.56	54.85
Zm00001d043058_P001	Maize	plasma membrane	55.23	54.48
TraesCS3B01G376200.1	Wheat	plasma membrane	54.59	54.02
TraesCS3D01G337800.1	Wheat	plasma membrane	54.59	53.9
TraesCS3A01G344300.1	Wheat	plasma membrane	49.36	52.98
EES18394	Sorghum	plasma membrane, plastid	50.64	50.21
Zm00001d038481_P001	Maize	plasma membrane, plastid	49.89	47.9
CDX85183	Canola	cytosol, plasma membrane	40.17	40.3
CDY68115	Canola	cytosol	5.88	40.15
CDX86452	Canola	plasma membrane	43.27	40.06
CDY20032	Canola	plasma membrane	43.06	39.74
CDY45475	Canola	cytosol	8.65	39.71
CDY00141	Canola	plasma membrane	42.52	39.29
CDY30082	Canola	cytosol	30.66	37.47
CDX98061	Canola	plasma membrane	34.08	37.09
CDY42780	Canola	cytosol	7.05	31.73
CDY70210	Canola	cytosol	7.05	31.43
CDX96323	Canola	cytosol	6.94	30.95
CDX99001	Canola	plasma membrane	30.45	29.56
CDY00268	Canola	plasma membrane	30.45	29.47
CDX76712	Canola	plasma membrane	30.77	29.18
CDY11488	Canola	plasma membrane	30.77	29.18
CDX86913	Canola	plasma membrane	30.13	29.07
CDX70013	Canola	plasma membrane	29.81	28.97
CDX76716	Canola	plasma membrane	4.38	23.98

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:A0A078C5G6	EnsemblPlants:CDX72142
ProteinID:CDX72142	ProteinID:CDX72142.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00155963001
InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF07714	PFAM:PF08263	PFAM:PF13516	PFAM:PF13855
PRINTS:PR00019	ScanProsite:PS00107	PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF244	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004EEE222	SEG:seg	:	:	:

Description

BnaC08g27320D

Coordinates

chrLK031795:+:2648992..2652364

Molecular Weight (calculated)

100566.0 Da

IEP (calculated)

7.013

GRAVY (calculated)

0.008

Length

936 amino acids

Sequence
(BLAST)

001: MNKVSIFTIL FLSVALAFPP PARSLDPPLN DDVLGLVAFK SDLRDPDQKL ASWNEDDYTP CAWNGVKCHP RTNRVTELTL DGFSLSGRIG RGLLQLHLVS
101: LKVVDLSGNG LSGSLPDGFF RQCGSLRAFS VAENKLTGKI PVSVGSCSSL ASLNLSSNGF SGSMPLGIWS LNTLRSLDLS RNELEGEFGT KIGRLNNLRA
201: IDLSRNRLSG PIPSEIGSCM LLKSVDLSEN SLSGNLPDTF QQLSLCYYLN LGKNLLEGEV PKWIGEMRSL ESLDLSMNKF SGEVPVSIGN LLRLKVLNFS
301: GNGFIGSLPE STGNCINLMA LDVSGNSLTG KLPVWLFQDG NSTGGVKKIQ VLDLSSNSFS GVIGAGFRGL RDLQGLNLSR NSLTGPIPST IGDLKHLGVL
401: DLSHNQLNGT VPRETGGAFS LEKLRLENNM LDGTIPSSIK NCSSLQSLIL SHNKLQGAIP PEMARLTNLQ EVDLSFNELT GTLPKQLANL GYLHTFNISH
501: NRLSGELPAG GLFNGISPDS VSGNQGICGA VVNKSCPAVS PKPIVLNPNA TFDPDSGEAT PLGAVGHKRI LLSISSLIAI SAAAAIVVGV IAITVLNLRV
601: RATTVSRSAV PIAFSGGDDF SRSPTTDSNS GKLVMFSGEP DFSTGTHALL NKDCELGRGG FGAVYRTVIR DEYPVAIKKL TVSSLVKSQE EFEREVKKLG
701: KLRHTNLVKL EGYYWTTSLQ LLIYEFLSGG SLYKHLHEAP GGSSTLSWND RFNVILGTAK CLAYLHQSNI IHYNIKSSNV LLDSSGEPKV GDYGLARLLP
801: MLDRYVLSSK IQSALGYMAP EFACRTVKIT EKCDVYGFGV LVLEVVTGKK PVEYMEDDVV VLCDMVREAL EDGRAEECID LRLQGKFPVE EAVAVIKLGL
901: ICTSQVPSSR PHMGEAVNIL RMIRCPSGSS DELGSS

Best Arabidopsis Sequence Match ( AT3G56370.1 )
(BLAST)

001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS

Arabidopsis Description

IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.