Factsheet for PGSC0003DMT400042952

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 8
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400055002
PGSC0003DMT400081474

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56370.1	PGSC0003DMT400055002	AT5G12900.1	15618632
AT3G56370.1	PGSC0003DMT400081474	AT5G12900.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g048950.2.1	Tomato	plasma membrane	96.98	96.98
PGSC0003DMT400070944	Potato	plasma membrane	79.31	73.17
KRH64211	Soybean	plasma membrane	71.14	65.03
KRH53723	Soybean	plasma membrane	70.92	64.83
VIT_13s0067g03050.t01	Wine grape	plasma membrane	74.94	64.42
AT3G56370.1	Thale cress	plasma membrane	68.68	63.69
CDY27220	Canola	plasma membrane	66.67	63.68
CDX72142	Canola	plasma membrane	66.44	63.46
Bra007241.1-P	Field mustard	plasma membrane	68.01	63.4
GSMUA_Achr9P04820_001	Banana	plasma membrane	53.8	61.51
GSMUA_Achr6P32490_001	Banana	plasma membrane	52.13	60.84
GSMUA_Achr5P29680_001	Banana	plasma membrane	50.34	60.08
PGSC0003DMT400068892	Potato	plasma membrane	60.74	57.89
HORVU4Hr1G050250.1	Barley	plasma membrane	62.75	57.66
TraesCS4D01G172000.1	Wheat	plasma membrane	62.75	57.66
TraesCS4A01G135200.1	Wheat	plasma membrane	62.64	57.55
EER94903	Sorghum	plasma membrane	62.3	57.3
TraesCS4B01G169900.1	Wheat	plasma membrane	62.53	57.27
Os03t0335500-01	Rice	plasma membrane	62.19	57.26
Zm00001d029059_P001	Maize	plasma membrane	61.86	56.89
Os01t0821900-01	Rice	peroxisome, plasma membrane	48.32	55.74
TraesCS3B01G376200.1	Wheat	plasma membrane	56.94	53.81
TraesCS3D01G337800.1	Wheat	plasma membrane	57.05	53.8
HORVU3Hr1G081050.3	Barley	plastid	50.45	53.75
EES03806	Sorghum	plasma membrane	56.71	53.48
Os05t0478300-01	Rice	plasma membrane, plastid, vacuole	46.98	53.37
TraesCS3A01G344300.1	Wheat	plasma membrane	51.79	53.1
Zm00001d043058_P001	Maize	plasma membrane	55.93	52.69
EES18394	Sorghum	plasma membrane, plastid	51.57	48.83
Zm00001d038481_P001	Maize	plasma membrane, plastid	50.45	46.26
PGSC0003DMT400055650	Potato	plasma membrane	44.63	40.55
PGSC0003DMT400010074	Potato	plasma membrane	38.37	38.89
PGSC0003DMT400079665	Potato	plasma membrane	22.71	27.14
PGSC0003DMT400048435	Potato	plasma membrane	29.87	26.97

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102580005	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M1BDV2	PFAM:PF07714	PFAM:PF08263	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400016654
PGSC:PGSC0003DMG400016654	EnsemblPlants:PGSC0003DMT400042952	PRINTS:PR00019	ScanProsite:PS00107	PFscan:PS50011	PANTHER:PTHR27000
PANTHER:PTHR27000:SF244	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00029693BC	RefSeq:XP_006358746.1	SEG:seg

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016654]

Coordinates

chr6:-:34147584..34151781

Molecular Weight (calculated)

96563.5 Da

IEP (calculated)

6.003

GRAVY (calculated)

0.083

Length

894 amino acids

Sequence
(BLAST)

001: MRKVFVTVFL FLLVEAVFVE ALNPSLNDDV LGLIVFKSDV QDPYGKLKSW NEEDDSPCNW DGINCNPRSN RVTEVVLDGF GLSGRISRGL LRLQFLHRLS
101: LAKNNLTGSI SVSLAQLAYL KFLDLSENNL SGNIPGDYFQ QCGPLRSISL ANNKISGQIP ESLSSCVTLA SLNVSSNQFS GLVPSGIWSL NGLRSLDLSN
201: NLLDGEIPVD IQGLSNLRAL NLGRNNFKGE IPDEIGGCLL LRSIDLSENS LSGELPSTMQ KLSLCSEFIL RRNAFVGIVP KWIGEMKSLQ ILDVSENNFS
301: GIIPTSIGEL ESLKVLKVSR NGISGSLPES LSSCVKLLEL DVSHNSLAGT IPKTVGQLKS LNILDLSENR LYGIVPVEIG GAKSLMELSL EKNSLTGEIP
401: SSIGYCSSLV SLSLSHNGLT GPVPEALAKL TYLQSVDLSF NKLTGVLPKQ LGDLGHLSLF NISHNQLQGE LPSNGFFNTI SPYSVSANPS LCGAAVNRSC
501: STVMPKPIVL NPNSTDSSPN TVPQSIRHEK KILSISALIA IGAAAVIFVG VIAITVLNIR VRSAAPRSAA AALTFSGGDD FSHSPSTDAN SGKLVMFSGD
601: PDFSTGAHAL LNKDCELGRG GFGAVYRTVL GDGHPVAIKK LTVSSLVKSQ EDFEREVRKL GKVRHHNLVT LEGYYWTPSL QLLIYEFVAG GNLYKHLHEG
701: SGGCFLSWNE RFNIILGTAK SLAHLHQMNV IHYNLKSSNV LIDSSGEPKV ADYGLARLLP MLDRYVLSSK IQSALGYMAP EFACKTVKIT EKCDVYGFGV
801: LVLEVVTGKR PVEYMEDDVV VLCDMVRGAL EEGRVEDCID ARLQGKFPAD EVIPVMKLGL ICTSQVPSNR PDMGEVVNIL ELIRCPSEGQ DELV

Best Arabidopsis Sequence Match ( AT3G56370.1 )
(BLAST)

001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS

Arabidopsis Description

IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.