Factsheet for Bra007241.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 8
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006167.1-P
Bra008872.1-P
Bra023381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56370.1	Bra006167.1-P	AT5G12900.1	15618632
AT3G56370.1	Bra008872.1-P	AT5G12900.1	15618632
AT3G56370.1	Bra023381.1-P	AT5G12900.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27220	Canola	plasma membrane	96.56	98.93
AT3G56370.1	Thale cress	plasma membrane	88.53	88.07
PGSC0003DMT400042952	Potato	plasma membrane	63.4	68.01
Solyc06g048950.2.1	Tomato	plasma membrane	62.88	67.45
KRH53723	Soybean	plasma membrane	67.67	66.36
KRH64211	Soybean	plasma membrane	67.36	66.05
VIT_13s0067g03050.t01	Wine grape	plasma membrane	69.03	63.65
PGSC0003DMT400070944	Potato	plasma membrane	64.03	63.36
Solyc06g048620.2.1	Tomato	plasma membrane	63.71	62.92
GSMUA_Achr9P04820_001	Banana	plasma membrane	50.47	61.89
GSMUA_Achr6P32490_001	Banana	plasma membrane	49.22	61.62
GSMUA_Achr5P29680_001	Banana	plasma membrane	47.65	61.01
TraesCS4D01G172000.1	Wheat	plasma membrane	60.79	59.92
HORVU4Hr1G050250.1	Barley	plasma membrane	60.48	59.61
TraesCS4A01G135200.1	Wheat	plasma membrane	60.38	59.51
TraesCS4B01G169900.1	Wheat	plasma membrane	60.27	59.22
Bra028916.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane, plastid	42.54	59.13
EER94903	Sorghum	plasma membrane	59.85	59.05
Os03t0335500-01	Rice	plasma membrane	59.54	58.81
Zm00001d029059_P001	Maize	plasma membrane	59.33	58.54
Os01t0821900-01	Rice	peroxisome, plasma membrane	47.03	58.19
Os05t0478300-01	Rice	plasma membrane, plastid, vacuole	45.67	55.65
Zm00001d043058_P001	Maize	plasma membrane	54.85	55.43
EES03806	Sorghum	plasma membrane	54.74	55.38
TraesCS3B01G376200.1	Wheat	plasma membrane	54.33	55.07
HORVU3Hr1G081050.3	Barley	plastid	48.18	55.07
TraesCS3D01G337800.1	Wheat	plasma membrane	54.22	54.85
TraesCS3A01G344300.1	Wheat	plasma membrane	49.11	54.01
EES18394	Sorghum	plasma membrane, plastid	50.16	50.95
Zm00001d038481_P001	Maize	plasma membrane, plastid	49.63	48.82
Bra025319.1-P	Field mustard	plasma membrane	43.48	41.25
Bra039063.1-P	Field mustard	plasma membrane	42.86	40.53
Bra019768.1-P	Field mustard	plasma membrane	34.62	37.3
Bra029522.1-P	Field mustard	cytosol	6.78	30.95
Bra010067.1-P	Field mustard	plasma membrane	21.48	29.34
Bra007759.1-P	Field mustard	plasma membrane	30.03	29.18
Bra009287.1-P	Field mustard	plasma membrane	27.95	28.63

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra007241	EnsemblPlants:Bra007241.1
EnsemblPlants:Bra007241.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675
InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M4CSP9
PFAM:PF07714	PFAM:PF08263	PFAM:PF13516	PFAM:PF13855	PRINTS:PR00019	ScanProsite:PS00107
PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF244	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00369
SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002542B86
SEG:seg	:	:	:	:	:

Description

AT3G56370 (E=3e-296) | leucine-rich repeat transmembrane protein kinase, putative

Coordinates

chrA09:-:28154745..28158037

Molecular Weight (calculated)

102880.0 Da

IEP (calculated)

6.810

GRAVY (calculated)

0.009

Length

959 amino acids

Sequence
(BLAST)

001: MNKVSIFTLL FLSVVLPFPP PVRSLDPPLN DDVLGLVAFK SDLRDPDQKL ASWNEDDYTP CAWNGVKCHP RTNRVTELTL DGFSLSGRIG RGLLQLQSLH
101: KLSLSNNNLT GTVNPNLISS LGSLKVVDLS GNGLSGSLPD GFFRQCGSLR VFSVAENKLT GKIPVSVGSC SSLASLNLSS NRFSGSMPLG IWSLNTLRSL
201: DLSRNELEGE LGTKIGRLNN LRAIDLSRNR LSGPIPSEIG SCMLLKSVDL SENSLSGNLP DTFQQLSLCY YLNLGRNLLD GEVPKWIGEM RSLESLDLSM
301: NKFSGEVPGS IGNLLRLKVL NFSGNGFIGS LPDSTGNCIS LMALDVSGNL LTGKLPVWLF QDGNSTGGVK KIQVLDLSCN SFSGVIGAGF GGLRDLQGLN
401: LSRNSLTGPI PSTIGDLKHL GVLDLSHNQL NGTVPKETGG AVSLEELRLE NNMLEGTIPS SIKNCSSLQS LILSHNKLQG AIPPEMARLT NLQEVDLSFN
501: DLTGTLPKQL ANLGYLHTFN ISHNHLSGEL PAGGLFNGIS PDSVSGNQGI CGAVVNKSCP AVSPKPIVLN PNATFDPDSG EATPLGAVGH KRILLSISSL
601: IAISAAAAIV VGVIAITVLN LRVRATTVSR SAVPIAFSGG DDFSRSPTTD SNSGKLVMFS GEPDFSTGTH ALLNKDCELG RGGFGAVYRT VIRDEYPVAI
701: KKLTVSSLVK SQEEFEREVK KLGKLRHTNL VKLEGYYWTT SLQLLIYEFL SGGSLYKHLH EAPGGSSTLS WNDRFNVILG TAKCLAYLHQ SNIIHYNIKS
801: SNVLLDSSGE PKVGDYGLAR LLPMLDRYVL SSKIQSALGY MAPEFACRTV KITEKCDVYG FGVLVLEVVT GKKPVEYMED DVVVLCDMVR EALEDGRAEE
901: CVDMRLQGKF PVEEAVAVIK LGLICTSQVP SSRPHMGEAV NILRMIRCPS GSSDELGSS

Best Arabidopsis Sequence Match ( AT3G56370.1 )
(BLAST)

001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS

Arabidopsis Description

IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.