CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10167
KRH23169
KRH24675
KRH29674

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56370.1	KRH10167	AT5G12900.1	15618632
AT3G56370.1	KRH23169	AT5G12900.1	15618632
AT3G56370.1	KRH24675	AT5G12900.1	15618632
AT3G56370.1	KRH29674	AT5G12900.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53723	Soybean	plasma membrane	96.01	96.01
PGSC0003DMT400042952	Potato	plasma membrane	65.03	71.14
Solyc06g048950.2.1	Tomato	plasma membrane	64.42	70.47
VIT_13s0067g03050.t01	Wine grape	plasma membrane	73.93	69.52
AT3G56370.1	Thale cress	plasma membrane	67.89	68.88
PGSC0003DMT400070944	Potato	plasma membrane	66.97	67.6
CDX72142	Canola	plasma membrane	64.52	67.41
CDY27220	Canola	plasma membrane	64.52	67.41
Bra007241.1-P	Field mustard	plasma membrane	66.05	67.36
Solyc06g048620.2.1	Tomato	plasma membrane	66.87	67.35
GSMUA_Achr9P04820_001	Banana	plasma membrane	51.94	64.96
GSMUA_Achr6P32490_001	Banana	plasma membrane	50.31	64.23
KRH00443	Soybean	cytosol, nucleus	60.84	63.98
KRH40729	Soybean	plasma membrane	62.07	62.77
GSMUA_Achr5P29680_001	Banana	plasma membrane	47.34	61.82
KRH76129	Soybean	plasma membrane	60.53	61.09
KRH65414	Soybean	plasma membrane	60.02	60.52
EER94903	Sorghum	plasma membrane	60.12	60.49
Zm00001d029059_P001	Maize	plasma membrane	59.92	60.29
Os03t0335500-01	Rice	plasma membrane	59.41	59.84
HORVU4Hr1G050250.1	Barley	plasma membrane	59.51	59.81
TraesCS4D01G172000.1	Wheat	plasma membrane	59.51	59.81
TraesCS4A01G135200.1	Wheat	plasma membrane	59.51	59.81
TraesCS4B01G169900.1	Wheat	plasma membrane	59.51	59.63
Os01t0821900-01	Rice	peroxisome, plasma membrane	45.71	57.68
Os05t0478300-01	Rice	plasma membrane, plastid, vacuole	44.58	55.4
TraesCS3A01G344300.1	Wheat	plasma membrane	49.39	55.39
TraesCS3B01G376200.1	Wheat	plasma membrane	53.17	54.97
TraesCS3D01G337800.1	Wheat	plasma membrane	53.27	54.96
HORVU3Hr1G081050.3	Barley	plastid	47.14	54.95
EES03806	Sorghum	plasma membrane	53.07	54.75
Zm00001d043058_P001	Maize	plasma membrane	52.66	54.27
EES18394	Sorghum	plasma membrane, plastid	49.39	51.17
Zm00001d038481_P001	Maize	plasma membrane, plastid	48.77	48.92
KRH70560	Soybean	plasma membrane	45.91	44.59
KRH01549	Soybean	nucleus, plasma membrane	45.71	44.39
KRH27994	Soybean	plasma membrane	35.07	38.8
KRH77441	Soybean	plasma membrane	34.56	38.15
KRH52253	Soybean	plasma membrane	31.39	31.2
KRH61582	Soybean	plasma membrane	31.19	30.96
KRH15603	Soybean	plasma membrane	30.78	30.71
KRH05414	Soybean	plasma membrane	30.78	30.71
KRG91394	Soybean	plasma membrane	30.06	29.61
KRH35424	Soybean	plasma membrane	29.75	29.42
KRH38704	Soybean	plasma membrane	29.45	29.27
KRH09211	Soybean	plasma membrane	29.75	28.84

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100791629	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10	EMBL:ACUP02002747
ncoils:Coil	EnsemblPlantsGene:GLYMA_04G222800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	UniProt:I1JYC1	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675
EnsemblPlants:KRH64211	ProteinID:KRH64211	ProteinID:KRH64211.1	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF07714	PFAM:PF08263	PFAM:PF13855	ScanProsite:PS00107
PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF244	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00369
SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00023BF283
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:49330862..49334606

Molecular Weight (calculated)

104785.0 Da

IEP (calculated)

6.570

GRAVY (calculated)

0.071

Length

978 amino acids

Sequence
(BLAST)

001: MQALFSSMRV FLRLVWLLEL LCVAVTAVNP SLNDDVLGLI VFKADIRDPK GKLASWNEDD ESACGGSWVG VKCNPRSNRV VEVNLDGFSL SGRIGRGLQR
101: LQFLRKLSLA NNNLTGGINP NIARIDNLRV IDLSGNSLSG EVSEDVFRQC GSLRTVSLAR NRFSGSIPST LGACSALAAI DLSNNQFSGS VPSRVWSLSA
201: LRSLDLSDNL LEGEIPKGIE AMKNLRSVSV ARNRLTGNVP YGFGSCLLLR SIDLGDNSFS GSIPGDFKEL TLCGYISLRG NAFSGGVPQW IGEMRGLETL
301: DLSNNGFTGQ VPSSIGNLQS LKMLNFSGNG LTGSLPESMA NCTKLLVLDV SRNSMSGWLP LWVFKSDLDK VLVSENVQSG SKKSPLFAMA ELAVQSLQVL
401: DLSHNAFSGE ITSAVGGLSS LQVLNLANNS LGGPIPPAVG ELKTCSSLDL SYNKLNGSIP WEIGGAVSLK ELVLEKNFLN GKIPTSIENC SLLTTLILSQ
501: NKLSGPIPAA VAKLTNLQTV DVSFNNLTGA LPKQLANLAN LLTFNLSHNN LQGELPAGGF FNTITPSSVS GNPSLCGAAV NKSCPAVLPK PIVLNPNTST
601: DTGPSSLPPN LGHKRIILSI SALIAIGAAA VIVIGVISIT VLNLRVRSST SRDAAALTFS AGDEFSHSPT TDANSGKLVM FSGEPDFSSG AHALLNKDCE
701: LGRGGFGAVY QTVLRDGHSV AIKKLTVSSL VKSQEDFERE VKKLGKIRHQ NLVELEGYYW TPSLQLLIYE YLSGGSLYKH LHEGSGGNFL SWNERFNVIL
801: GTAKALAHLH HSNIIHYNIK STNVLLDSYG EPKVGDFGLA RLLPMLDRYV LSSKIQSALG YMAPEFACKT VKITEKCDVY GFGVLVLEIV TGKRPVEYME
901: DDVVVLCDMV RGALEEGRVE ECIDERLQGK FPAEEAIPVM KLGLICTSQV PSNRPDMGEV VNILELIRCP SEGQEELA

Best Arabidopsis Sequence Match ( AT3G56370.1 )
(BLAST)

001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS

Arabidopsis Description

IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.