CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01890.1	KRG89812	AT2G41090.1	17360592
AT5G01890.1	KRG94975	AT2G41090.1	17360592
AT5G01890.1	KRH18664	AT2G41090.1	17360592
AT5G01890.1	KRH31638	AT4G14640.1	17360592
AT5G01890.1	KRH69070	AT4G14640.1	17360592
AT5G01890.1	KRG89812	AT5G21274.1	17360592
AT5G01890.1	KRG94975	AT5G21274.1	17360592
AT5G01890.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40729	Soybean	plasma membrane	95.91	92.24
KRH76129	Soybean	plasma membrane	80.97	77.71
KRH65414	Soybean	plasma membrane	80.22	76.91
VIT_08s0058g01340.t01	Wine grape	plasma membrane	68.28	67.91
PGSC0003DMT400068892	Potato	plasma membrane	65.81	65.25
Bra028916.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane, plastid	47.2	63.62
Solyc09g015520.2.1	Tomato	plasma membrane	65.7	63.32
KRH64211	Soybean	plasma membrane	63.98	60.84
CDY04822	Canola	plasma membrane	60.32	60.45
KRH53723	Soybean	plasma membrane	63.55	60.43
AT5G01890.1	Thale cress	plasma membrane	62.26	59.88
GSMUA_Achr9P04820_001	Banana	plasma membrane	49.89	59.34
GSMUA_Achr6P32490_001	Banana	plasma membrane	47.96	58.22
GSMUA_Achr5P29680_001	Banana	plasma membrane	46.88	58.21
HORVU4Hr1G050250.1	Barley	plasma membrane	59.03	56.42
TraesCS4D01G172000.1	Wheat	plasma membrane	59.03	56.42
TraesCS4A01G135200.1	Wheat	plasma membrane	59.03	56.42
TraesCS4B01G169900.1	Wheat	plasma membrane	59.14	56.35
EER94903	Sorghum	plasma membrane	58.71	56.17
Os03t0335500-01	Rice	plasma membrane	58.28	55.82
Zm00001d029059_P001	Maize	plasma membrane	57.85	55.35
Os01t0821900-01	Rice	peroxisome, plasma membrane	45.81	54.97
Os05t0478300-01	Rice	plasma membrane, plastid, vacuole	45.81	54.13
HORVU3Hr1G081050.3	Barley	plastid	48.6	53.87
TraesCS3A01G344300.1	Wheat	plasma membrane	49.35	52.64
TraesCS3B01G376200.1	Wheat	plasma membrane	53.44	52.54
TraesCS3D01G337800.1	Wheat	plasma membrane	53.55	52.53
Zm00001d043058_P001	Maize	plasma membrane	52.58	51.53
EES03806	Sorghum	plasma membrane	52.37	51.37
EES18394	Sorghum	plasma membrane, plastid	48.71	47.99
Zm00001d038481_P001	Maize	plasma membrane, plastid	48.6	46.36
KRH70560	Soybean	plasma membrane	45.48	42.01
KRH01549	Soybean	nucleus, plasma membrane	44.95	41.51
KRH27994	Soybean	plasma membrane	35.48	37.33
KRH77441	Soybean	plasma membrane	35.27	37.02
KRH52253	Soybean	plasma membrane	32.47	30.69
KRH61582	Soybean	plasma membrane	32.26	30.46
KRH35424	Soybean	plasma membrane	31.83	29.93
KRG91394	Soybean	plasma membrane	31.83	29.81
KRH15603	Soybean	plasma membrane	31.4	29.8
KRH05414	Soybean	plasma membrane	31.4	29.8
KRH38704	Soybean	plasma membrane	31.4	29.67
KRH09211	Soybean	plasma membrane	31.61	29.14

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10	UniProt:A0A0R0FDC0	EMBL:ACUP02011444
ncoils:Coil	EnsemblPlantsGene:GLYMA_18G213600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	EnsemblPlants:KRH00443
ProteinID:KRH00443	ProteinID:KRH00443.1	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00069	PFAM:PF00560	PFAM:PF08263	PFAM:PF13516	PFAM:PF13855
ScanProsite:PS00107	PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF324	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00365	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112	TMHMM:TMhelix	UniParc:UPI00023D941A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:50059489..50062495

Molecular Weight (calculated)

100494.0 Da

IEP (calculated)

5.909

GRAVY (calculated)

-0.014

Length

930 amino acids

Sequence
(BLAST)

001: AGLDDPKRKL SSWNEDDNSP CNWEGVKCDP SSNRVTGLVL DGFSLSGHVD RGLLRLQSLQ ILSLSRNNFT GPINPDLHLL GSLQVVDLSD NNLSGEIAEG
101: FFQQCGSLRT VSFAKNNLTG KIPESLSSCS NLASVNFSSN QLHGELPNGV WFLRGLQSLD LSDNLLEGEI PEGIQNLYDI RELSLQRNRF SGRLPGDIGG
201: CILLKSLDLS GNFLSGELPQ SLQRLTSCTS LSLQGNSFTG GIPEWIGELK NLEVLDLSAN GFSGWIPKSL GNLDSLHRLN LSRNQLTGNL PDSMMNCTRL
301: LALDISHNHL AGYVPSWIFR MGVQSISLSG NGFSKGNYPS LKPTPASYHG LEVLDLSSNA FSGVLPSGIR GLSSLQVFNI STNNISGSIP VGIGDLKSLY
401: IVDLSDNKLN GSIPSEIEGA TSLSELRLQK NFLGGRIPAQ IDKCSSLTFL ILSHNKLTGS IPAAIANLTN LQYVDLSWNE LSGSLPKELT NLSHLFSFNV
501: SYNHLEGELP VGGFFNTISS SSVSGNPLLC GSVVNHSCPS VHPKPIVLNP NSSGSNSSIS SQNHRHKIIL SISALIAIGA AAFIAIGVVA VTVLNIHVRS
601: SMEHSAAPFA FSGGEDYSCS PANDPNYGKL VMFSGDADFA DGAHNLLNKE SEIGRGGFGV VYRTFLRDGH AVAIKKLTVS SLIKSQEDFD REIKKLGNVK
701: HPNLVALEGY YWTSSLQLLI YEYLSSGSLH KVLHDDSSKN VFSWPQRFKI ILGMAKGLAH LHQMNIIHYN LKSTNVLIDC SGEPKVGDFG LVKLLPMLDH
801: CVLSSKVQSA LGYMAPEFAC RTVKITEKCD VYGFGILVLE IVTGKRPVEY MEDDVVVLCD MVRGALEEGK VEQCVDGRLL GNFAAEEAIP VIKLGLICAS
901: QVPSNRPEMA EVVNILELIQ CPSEGQEELE

Best Arabidopsis Sequence Match ( AT5G01890.1 )
(BLAST)

001: MFNGAVSLLF LFLAVVSARA DPTFNDDVLG LIVFKAGLDD PLSKLSSWNS EDYDPCNWVG CTCDPATNRV SELRLDAFSL SGHIGRGLLR LQFLHTLVLS
101: NNNLTGTLNP EFPHLGSLQV VDFSGNNLSG RIPDGFFEQC GSLRSVSLAN NKLTGSIPVS LSYCSTLTHL NLSSNQLSGR LPRDIWFLKS LKSLDFSHNF
201: LQGDIPDGLG GLYDLRHINL SRNWFSGDVP SDIGRCSSLK SLDLSENYFS GNLPDSMKSL GSCSSIRLRG NSLIGEIPDW IGDIATLEIL DLSANNFTGT
301: VPFSLGNLEF LKDLNLSANM LAGELPQTLS NCSNLISIDV SKNSFTGDVL KWMFTGNSES SSLSRFSLHK RSGNDTIMPI VGFLQGLRVL DLSSNGFTGE
401: LPSNIWILTS LLQLNMSTNS LFGSIPTGIG GLKVAEILDL SSNLLNGTLP SEIGGAVSLK QLHLHRNRLS GQIPAKISNC SALNTINLSE NELSGAIPGS
501: IGSLSNLEYI DLSRNNLSGS LPKEIEKLSH LLTFNISHNN ITGELPAGGF FNTIPLSAVT GNPSLCGSVV NRSCLSVHPK PIVLNPNSSN PTNGPALTGQ
601: IRKSVLSISA LIAIGAAAVI AIGVVAVTLL NVHARSSVSR HDAAAALALS VGETFSCSPS KDQEFGKLVM FSGEVDVFDT TGADALLNKD SELGRGGFGV
701: VYKTSLQDGR PVAVKKLTVS GLIKSQEEFE REMRKLGKLR HKNVVEIKGY YWTQSLQLLI HEFVSGGSLY RHLHGDESVC LTWRQRFSII LGIARGLAFL
801: HSSNITHYNM KATNVLIDAA GEAKVSDFGL ARLLASALDR CVLSGKVQSA LGYTAPEFAC RTVKITDRCD VYGFGILVLE VVTGKRPVEY AEDDVVVLCE
901: TVREGLEEGR VEECVDPRLR GNFPAEEAIP VIKLGLVCGS QVPSNRPEME EVVKILELIQ CPSHDLE

Arabidopsis Description

PXC2Leucine-rich repeat receptor-like protein kinase PXC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.