Factsheet for VIT_08s0058g01340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01890.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT5G01890.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT5G01890.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT5G01890.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT5G01890.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00443	Soybean	cytosol, nucleus	67.91	68.28
KRH40729	Soybean	plasma membrane	70.16	67.84
KRH76129	Soybean	plasma membrane	68.24	65.84
PGSC0003DMT400068892	Potato	plasma membrane	65.88	65.67
Solyc09g015520.2.1	Tomato	plasma membrane	67.59	65.49
KRH65414	Soybean	plasma membrane	67.81	65.36
VIT_13s0067g03050.t01	Wine grape	plasma membrane	72.09	64.81
Bra028916.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane, plastid	45.99	62.32
GSMUA_Achr5P29680_001	Banana	plasma membrane	49.84	62.22
GSMUA_Achr9P04820_001	Banana	plasma membrane	51.66	61.76
CDY04822	Canola	plasma membrane	60.64	61.1
AT5G01890.1	Thale cress	plasma membrane	62.67	60.6
GSMUA_Achr6P32490_001	Banana	plasma membrane	49.52	60.44
HORVU4Hr1G050250.1	Barley	plasma membrane	61.5	59.1
TraesCS4D01G172000.1	Wheat	plasma membrane	61.39	58.99
TraesCS4A01G135200.1	Wheat	plasma membrane	61.39	58.99
TraesCS4B01G169900.1	Wheat	plasma membrane	61.39	58.81
Os03t0335500-01	Rice	plasma membrane	60.75	58.5
EER94903	Sorghum	plasma membrane	60.21	57.92
Os01t0821900-01	Rice	peroxisome, plasma membrane	47.7	57.55
Zm00001d029059_P001	Maize	plasma membrane	59.47	57.2
Os05t0478300-01	Rice	plasma membrane, plastid, vacuole	46.1	54.76
HORVU3Hr1G081050.3	Barley	plastid	49.09	54.71
TraesCS3D01G337800.1	Wheat	plasma membrane	54.55	53.8
EES03806	Sorghum	plasma membrane	54.55	53.8
Zm00001d043058_P001	Maize	plasma membrane	54.55	53.74
TraesCS3B01G376200.1	Wheat	plasma membrane	54.33	53.7
TraesCS3A01G344300.1	Wheat	plasma membrane	49.95	53.55
EES18394	Sorghum	plasma membrane, plastid	50.8	50.32
Zm00001d038481_P001	Maize	plasma membrane, plastid	50.27	48.21
VIT_05s0062g01070.t01	Wine grape	nucleus	46.74	44.32
VIT_00s1764g00020.t01	Wine grape	cytosol, peroxisome	21.6	41.82
VIT_04s0008g01970.t01	Wine grape	plasma membrane	32.09	30.43
VIT_16s0022g02030.t01	Wine grape	cytosol, plasma membrane, vacuole	30.59	30.14

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10	ProteinID:CCB44767	ProteinID:CCB44767.1
UniProt:F6GXW6	EMBL:FN594967	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf
InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF07714
PFAM:PF08263	PFAM:PF13855	PRINTS:PR00019	ScanProsite:PS00107	PFscan:PS50011	PANTHER:PTHR27000
PANTHER:PTHR27000:SF324	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TIGR:TC59576	TMHMM:TMhelix	UniParc:UPI000210A030	ArrayExpress:VIT_08s0058g01340
EnsemblPlantsGene:VIT_08s0058g01340	EnsemblPlants:VIT_08s0058g01340.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:10799455..10803380

Molecular Weight (calculated)

101364.0 Da

IEP (calculated)

6.778

GRAVY (calculated)

0.091

Length

935 amino acids

Sequence
(BLAST)

001: MVVTLFAVLF IVPVVLGSLD PGFNDDVLGL IVFKAGLQDP ESKLISWNED DNNPCNWAGV KCDRQTNRVS ELLLDNFSLS GRIGRGLLRL QFLRILSLSK
101: NNFTGTINPS LARIASLRVI DLSENNLSGP IPDEFFRQCG SLIVVSLAGN KLSGQIPDTL SLCKTLRGVN FSSNQLSGQL PDGIWSLYGL RSLDLSNNFL
201: EGEIPEGIGS LYSLRAINLG KNKFSGRIPD SIGSCLLLRL LDLSENLFSG GLPESMQRLR MCNYLSLRGN LLTGEVPAWI WGMRNLGTLD LSANVFSGQI
301: PNSIGNLLLL KELNLSSNQF GGSLPESMTK CTNLVAMDVS HNLLTGNLPA WIFSLGLQTI SLAGNKLNGS VEYSPLTSLQ FLNMSRNSLI GSIPESIGEL
401: KTLHVLDLSN NQLNGSIPFE IRGAVLLKEL KLEKNFLTGK IPTQIEKCKS LTSLILSQNH LTGPIPAAIA NLTSIENVDL SFNNLSGSLP KELTNLSHLL
501: SFNISHNNIQ GELPSGGFFN TISPSSVSGN PSLCGSVVNR SCPSVHPKPI VLNPDSSSNS SNAGSFPSNR RHKIILSISA LIAIGAAIFI AVGVLAITIL
601: NIHARSSMSH AAASPILSGG DDFSHSPTND AQYGKLVMFS GDADFVAGAH ALLNKDCELG RGGFGAVYRT ILRDGRSVAI KKLTVSSLIK SQEDFEREVK
701: NLGKIRHHNL VALEGYYWTS SLQLLIYEYI SSGSLYKHLH EVPGKSCLSW RERFNIVLGT AKGLAHLHQL NIIHYNLKST NILIDSGGEP KVGDFALARL
801: LPMLDRYVLS SKIQSALGYM APEFACRTVK ITEKCDVYGF GVLVLEVVTG RRPVEYMEDD VVVLCDMVRG ALDEGKVEEC VDRRLQGEFP ADEAIPVIKL
901: GLICASQVPS NRPDMGEVVN ILELIQCPSE GQALE

Best Arabidopsis Sequence Match ( AT3G56370.1 )
(BLAST)

001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS

Arabidopsis Description

IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.