Factsheet for VIT_00s1764g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45475	Canola	cytosol	21.95	51.96
KRH27994	Soybean	plasma membrane	79.71	43.55
KRH77441	Soybean	plasma membrane	79.5	43.34
PGSC0003DMT400010074	Potato	plasma membrane	77.43	42.4
Solyc08g079740.2.1	Tomato	plasma membrane	77.02	42.18
GSMUA_Achr5P10330_001	Banana	plasma membrane	63.35	41.18
GSMUA_Achr1P03780_001	Banana	plasma membrane	57.97	40.52
CDY30082	Canola	cytosol	63.56	40.08
AT1G12460.1	Thale cress	plasma membrane	69.98	38.32
Bra019768.1-P	Field mustard	plasma membrane	68.53	37.19
AT1G62950.1	Thale cress	plasma membrane	68.32	37.08
CDX98061	Canola	plasma membrane	65.63	36.86
EER95591	Sorghum	plasma membrane	64.39	34.79
Os03t0127700-02	Rice	plasma membrane	63.98	34.68
Zm00001d027463_P001	Maize	plasma membrane	63.98	34.26
Zm00001d048453_P001	Maize	plastid	64.18	34.25
Os10t0531700-00	Rice	plasma membrane	56.52	34.04
TraesCS4B01G320600.1	Wheat	plasma membrane	62.32	33.82
TraesCS4D01G317100.1	Wheat	plasma membrane	62.32	33.78
TraesCS5A01G491400.1	Wheat	plasma membrane	62.11	33.67
HORVU4Hr1G083020.3	Barley	plasma membrane	59.83	32.08
HORVU3Hr1G116330.2	Barley	cytosol, mitochondrion	34.58	24.93
HORVU4Hr1G003680.1	Barley	plasma membrane	31.26	22.74
VIT_08s0058g01340.t01	Wine grape	plasma membrane	41.82	21.6
VIT_05s0062g01070.t01	Wine grape	nucleus	42.44	20.79
VIT_13s0067g03050.t01	Wine grape	plasma membrane	42.86	19.9
VIT_16s0022g02030.t01	Wine grape	cytosol, plasma membrane, vacuole	32.51	16.54
VIT_04s0008g01970.t01	Wine grape	plasma membrane	33.54	16.43

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100253000	wikigene:100253000	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10
ProteinID:CBI23559	ProteinID:CBI23559.3	UniProt:D7SZ79	EMBL:FN595386	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100253000	wikigene:LOC100253000	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF00069	PFAM:PF13855	PRINTS:PR00019	PFscan:PS50011	PFscan:PS51450	PANTHER:PTHR45268
InterPro:Prot_kinase_dom	SUPFAM:SSF52058	SUPFAM:SSF56112	TIGR:TC55774	TMHMM:TMhelix	UniParc:UPI0001BE261A
ArrayExpress:VIT_00s1764g00020	EnsemblPlantsGene:VIT_00s1764g00020	EnsemblPlants:VIT_00s1764g00020.t01	unigene:Vvi.19328	RefSeq:XP_002275029	RefSeq:XP_002275029.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:40405798..40407345

Molecular Weight (calculated)

52658.3 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.008

Length

483 amino acids

Sequence
(BLAST)

001: GDIPETIYNM TNLEILDLHR NQLNGSIPAT LGSLSKLQIL DLSQNSLSGS IPPSLENLTM LTYFNISYNS LSGAIPPMPK IQGFGSTAFF HNPGLCGDPL
101: ESCTGNGTAS ASRKTKLLTV PAIVAIVAAA VILTGVCVIS IMNIRARRRR KDHETVVEST PLGSSESNVI IGKLVLFSKS LPSKYEDWEA GTKALLDKDS
201: LIGGGSIGTV YKTTFEGGIS IAVKKLEFLG RIRSQDEFEH EIGRLGNLQH PNLVAFQGYY WSSTMQLILS EFVPNGNLYD NLHGLNYPGT STGVGNSELY
301: WSRRFQIALG TARALAYLHH DCRPPILHLN IKSSNILLDE KYEAKLSDYG LGKLLPILDN YGLTKFHNAV GYVAPELAQS FRLSEKCDVY SFGIILLELV
401: TGRNPVESSA ANEVVVLCEY VRGLLESGTA SNCFDTNLRG FSENELIQVM KLGLICTSET PLRRPSMAEV IQVLESIRSG SES

Best Arabidopsis Sequence Match ( AT1G12460.2 )
(BLAST)

001: MRKVHLFLVL VHFIYISTSR SDSISERDIL LQFKGSISDD PYNSLASWVS DGDLCNSFNG ITCNPQGFVD KIVLWNTSLA GTLAPGLSNL KFIRVLNLFG
101: NRFTGSNLFH GLAPFAVLTF KNITYFNVSW NRFGGEIGEI VDCSESLEFL DASSNELTGR IPTGVMGCKS LKLLDLESNK LNGSIPGSIG KMESLSVIRL
201: GNNSIDGVIP RDIGSLEFLQ VLNLHNLNLI GEVPEDISNC RVLLELDVSG NDLEGKISKK LLNLTNIKIL DLHRNRLNGS IPPELGNLSK VQFLDLSQNS
301: LSGPIPSSLG SLNTLTHFNV SYNNLSGVIP PVPMIQAFGS SAFSNNPFLC GDPLVTPCNS RGAAAKSRNS DALSISVIIV IIAAAVILFG VCIVLALNLR
401: ARKRRKDEEI LTVETTPLAS SIDSSGVIIG KLVLFSKNLP SKYEDWEAGT KALLDKENII GMGSIGSVYR ASFEGGVSIA VKKLETLGRI RNQEEFEQEI
501: GRLGGLQHPN LSSFQGYYFS STMQLILSEF VPNGSLYDNL HLRIFPGTSS SYGNTDLNWH RRFQIALGTA KALSFLHNDC KPAILHLNVK STNILLDERY
601: EAKLSDYGLE KFLPVMDSFG LTKKFHNAVG YIAPELAQQS LRASEKCDVY SYGVVLLELV TGRKPVESPS ENQVLILRDY VRDLLETGSA SDCFDRRLRE
701: FEENELIQVM KLGLLCTSEN PLKRPSMAEV VQVLESIRNG FGS

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Source:UniProtKB/Swiss-Prot;Acc:C0LGE4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.