Factsheet for TraesCS4D01G172000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2B01G113800.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5A01G265200.2
TraesCS5A01G382800.2
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5B01G264800.2
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1
TraesCS5D01G273100.1
TraesCS7A01G245900.1
TraesCS7B01G145600.1
TraesCS7D01G244400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56370.1	TraesCS5A01G265200.2	AT5G12900.1	15618632
AT3G56370.1	TraesCS5B01G264800.2	AT5G12900.1	15618632
AT3G56370.1	TraesCS5D01G273100.1	AT5G12900.1	15618632
AT3G56370.1	TraesCS7A01G245900.1	AT5G12900.1	15618632
AT3G56370.1	TraesCS7B01G145600.1	AT5G12900.1	15618632
AT3G56370.1	TraesCS7D01G244400.1	AT5G12900.1	15618632
AT5G01890.1	TraesCS1A01G308700.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS1A01G308800.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS1B01G319300.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS1D01G308000.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS2B01G113800.2	AT2G41090.1	17360592
AT5G01890.1	TraesCS3A01G184500.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS3A01G191900.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS3A01G335000.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS3B01G219900.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS3B01G365900.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS3D01G188600.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS3D01G194500.2	AT2G41090.1	17360592
AT5G01890.1	TraesCS3D01G328300.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS4B01G131100.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS4D01G126100.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS5A01G057100.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS5A01G057200.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS5A01G139700.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS5B01G059900.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS5B01G137100.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS5D01G068000.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS5D01G068100.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS5D01G153400.1	AT2G41090.1	17360592
AT5G01890.1	TraesCS5A01G382800.2	AT4G14640.1	17360592
AT5G01890.1	TraesCS1A01G308700.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS1A01G308800.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS1B01G319300.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS1D01G308000.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS2B01G113800.2	AT5G21274.1	17360592
AT5G01890.1	TraesCS3A01G184500.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS3A01G191900.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS3A01G335000.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS3B01G219900.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS3B01G365900.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS3D01G188600.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS3D01G194500.2	AT5G21274.1	17360592
AT5G01890.1	TraesCS3D01G328300.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS4B01G131100.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS4D01G126100.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS5A01G057100.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS5A01G057200.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS5A01G139700.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS5B01G059900.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS5B01G137100.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS5D01G068000.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS5D01G068100.1	AT5G21274.1	17360592
AT5G01890.1	TraesCS5D01G153400.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G135200.1	Wheat	plasma membrane	98.15	98.15
TraesCS4B01G169900.1	Wheat	plasma membrane	98.36	98.05
HORVU4Hr1G050250.1	Barley	plasma membrane	97.23	97.23
Os03t0335500-01	Rice	plasma membrane	88.59	88.77
EER94903	Sorghum	plasma membrane	84.28	84.36
Zm00001d029059_P001	Maize	plasma membrane	83.45	83.54
GSMUA_Achr9P04820_001	Banana	plasma membrane	53.75	66.88
GSMUA_Achr6P32490_001	Banana	plasma membrane	51.9	65.93
PGSC0003DMT400042952	Potato	plasma membrane	57.66	62.75
Solyc06g048950.2.1	Tomato	plasma membrane	56.63	61.63
VIT_08s0058g01340.t01	Wine grape	plasma membrane	58.99	61.39
CDY27220	Canola	plasma membrane	58.68	61.0
Bra007241.1-P	Field mustard	plasma membrane	59.92	60.79
CDX72142	Canola	plasma membrane	58.48	60.79
PGSC0003DMT400070944	Potato	plasma membrane	60.33	60.58
Solyc06g048620.2.1	Tomato	plasma membrane	60.33	60.45
KRH53723	Soybean	plasma membrane	59.92	59.61
KRH64211	Soybean	plasma membrane	59.81	59.51
AT3G56370.1	Thale cress	plasma membrane	58.89	59.44
TraesCS3D01G337800.1	Wheat	plasma membrane	57.76	59.28
KRH00443	Soybean	cytosol, nucleus	56.42	59.03
VIT_13s0067g03050.t01	Wine grape	plasma membrane	62.38	58.37
Bra028916.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane, plastid	41.01	57.83
KRH40729	Soybean	plasma membrane	57.25	57.6
KRH76129	Soybean	plasma membrane	56.83	57.07
PGSC0003DMT400068892	Potato	plasma membrane	54.47	56.5
KRH65414	Soybean	plasma membrane	56.22	56.39
CDY04822	Canola	plasma membrane	52.83	55.39
Solyc09g015520.2.1	Tomato	plasma membrane	54.78	55.23
AT5G01890.1	Thale cress	plasma membrane	52.31	52.64
TraesCS4D01G317100.1	Wheat	plasma membrane	34.43	37.6
TraesCS3D01G502600.1	Wheat	plasma membrane	42.96	36.63
TraesCS7D01G166100.1	Wheat	plasma membrane	31.96	31.9
TraesCS7D01G060400.1	Wheat	plasma membrane	27.85	28.23
TraesCS6D01G316000.1	Wheat	plastid	30.73	28.1

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF07714	PFAM:PF08263
PFAM:PF13855	PRINTS:PR00019	ScanProsite:PS00107	PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF244
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G172000	EnsemblPlants:TraesCS4D01G172000.1	TIGR:cd14066	SEG:seg

Description

No Description!

Coordinates

chr4D:-:299170632..299174099

Molecular Weight (calculated)

103145.0 Da

IEP (calculated)

5.867

GRAVY (calculated)

0.098

Length

973 amino acids

Sequence
(BLAST)

001: MRSLVLLLLV HLVFLAEAKG GGRAGLAAAL NDDVLGLIVF KADVVDPEGR LATWSEDDER ACAWAGITCD PRTGRVSGLN LAGFGLSGKL GRGLLRLESL
101: QSLSLSANNF SGDIPPDLAR LPDLQSLDLS SNAFSGAIPD GFFGKCHALR DVSLANNAFT GDTPDVGACG TLASLNLSSN RLASMLPSGI WSLNALRTLD
201: LSGNTITGEL PVGISKMFNL RALNLRRNRL TGSLPDDIGD CPLLRSVDLS SNSLSGNLPE SLRRLSTCTD LDLSSNELTG NVPTWVGEMV SLETLDLSGN
301: KFSGEIPGSI GGLMSLRELR LSGNGFTGGL PESIGGCRSL VHVDVSWNSL TGSLPTWVFA SGVQWVSVSY NTFSGVVMVP VNASSVIQGV DLSSNSFSGR
401: IPSELSQLLT LQSLNMSWNS LSGSVPASIV EMKSLELLDL SANRLNGSIP STIGGKSFKV LSLAKNSLTG EIPPQIGDCS ALTSLDLSHN GLTGAIPATM
501: ANLTNLQTAD LSRNKLTGGL PKQLSNLAHL VRFNISHNQL SGDLPPGSFF DTISLSSVSD NPGLCGAKLN SSCPGVLPKP IVLNPDSSSN PLAQKEPVPG
601: GLHHKKTILS ISALVAIGAA VLIAVGIITI TVLNLQVRAP GSHSAAAAAA LELSDGYLSQ SPTTDVNAGK LVMFGGGNPE FSASTHALLN KDCELGRGGF
701: GTVYKTTLRD GQPVAIKKLT VSSLVKSQDE FEREVKMLGK LRHRNLVALM GYYWTPSLQL LIYEFVSGGN LHKQLHESSN ANYLSWKERF DIVLGMARSL
801: AHLHRHDIIH YNLKSSNIML DGSGEAKVGD YGLAKLLPML DRYVLSSKVQ SALGYMAPEF TCRTVKITEK CDVYGFGVLV LEVMTGRAPV EYMEDDVIVL
901: CDVVRAALDE GKVEECVDGK LCGKFPLEEA VPIMKLGLVC TSQVPSNRPD MSEVVNILEL IRCPQDSPEA ELG

Best Arabidopsis Sequence Match ( AT3G56370.1 )
(BLAST)

001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS

Arabidopsis Description

IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.