CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH53723
KRH64211

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	KRH53723	AT3G56370.1	15618632
AT5G12900.1	KRH64211	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24675	Soybean	nucleus	93.54	93.38
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	9.52	73.68
KRH10167	Soybean	nucleus	71.43	72.66
KRH23169	Soybean	nucleus, plastid	68.88	72.19
VIT_06s0004g01680.t01	Wine grape	cytosol	72.28	71.91
CDY67745	Canola	plastid	38.27	61.64
PGSC0003DMT400081474	Potato	cytosol	62.41	61.06
PGSC0003DMT400055002	Potato	nucleus	63.95	61.04
Solyc01g006690.2.1	Tomato	nucleus	62.41	60.36
GSMUA_Achr9P20170_001	Banana	cytosol	33.84	59.76
Bra023381.1-P	Field mustard	nucleus	43.71	54.68
CDX85683	Canola	nucleus	44.05	54.3
CDX91157	Canola	nucleus	43.71	53.99
AT5G12900.1	Thale cress	nucleus, plastid	49.49	51.78
CDY55867	Canola	cytosol	47.62	51.76
CDY53973	Canola	nucleus	47.79	51.75
Bra008872.1-P	Field mustard	plastid	45.75	51.73
GSMUA_Achr3P03800_001	Banana	nucleus	49.83	51.4
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	50.68	51.2
Bra006167.1-P	Field mustard	plastid	43.88	50.99
GSMUA_Achr9P12540_001	Banana	nucleus	49.66	50.87
CDX70481	Canola	cytosol	45.24	49.26
Os08t0508100-01	Rice	plastid	49.15	47.93
EES14272	Sorghum	plastid	48.64	46.96
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	50.34	46.54
TraesCS7D01G244400.1	Wheat	plastid	46.77	46.3
TraesCS7A01G245900.1	Wheat	plastid	46.94	46.23
TraesCS7B01G145600.1	Wheat	plastid	46.6	45.74
Solyc01g014380.2.1	Tomato	nucleus	23.64	45.57
Solyc01g014120.2.1	Tomato	cytosol, nucleus	26.53	45.35
EER99087	Sorghum	plastid	45.41	45.25
Zm00001d020937_P001	Maize	plastid	45.07	45.22
HORVU5Hr1G073320.1	Barley	nucleus	40.31	44.97
Os09t0488800-01	Rice	plastid	46.77	44.93
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	45.75	44.68
Zm00001d031444_P001	Maize	plastid	45.58	44.52
TraesCS5B01G264800.2	Wheat	plastid	46.09	43.57
Zm00001d006025_P001	Maize	plastid	44.9	43.49
TraesCS5D01G273100.1	Wheat	plastid	45.41	43.34
GSMUA_Achr7P02030_001	Banana	cytosol	46.43	43.13
TraesCS5A01G265200.2	Wheat	plastid	45.58	42.88
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	45.75	41.9
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	35.88	38.79
KRH60459	Soybean	nucleus	25.51	34.01
KRH41761	Soybean	plastid	26.19	31.24

Protein Annotations

EMBL:ACUP02006815	EnsemblPlants:KRH29674	EnsemblPlantsGene:GLYMA_11G130700	EntrezGene:100779911	ncoils:Coil	PANTHER:PTHR31029
PANTHER:PTHR31029:SF3	ProteinID:KRH29674	ProteinID:KRH29674.1	SEG:seg	UniParc:UPI000233C6FD	UniProt:I1LJT1
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:9970738..9973728

Molecular Weight (calculated)

66986.6 Da

IEP (calculated)

8.450

GRAVY (calculated)

-0.557

Length

588 amino acids

Sequence
(BLAST)

001: MAATTATSAQ VFKDYKDSNN GNPEITRHEI QAAIAKAVEL RALHAALMRG NSPANARFPS PSPASRPVAH FSAQDYPVFT PSYEDDPLVG YNQNSMKSLT
101: VSESWDGSML EGGNNIDNIV ADYKERSSSR KGLYAGFANL ESHICPTEDT KSVTGSSANQ ITVLQTSPPK DYFKCRRRNS MEDFKSVSSC NKCNPATLTS
201: EFENARNSKS SNIVVQVTDS RSSLQSQTKN KGVISWLFPR LKKKHKNENS PNRAESEDVS QVLKDLGIMS IETLKKELVE ANENRDMALM EVSEMRNSLG
301: ELKQKLEYLE SYCKELKKAL KQAVQPRDFQ LCDQLSSLPQ SRKSFEGNGE NLMPVSEEVM VEGFLQIVSE SRLSVKQFCK TLINHIEETD HSLTENLNFL
401: LQPYKLSLNS KYSKAVLYHF EAFINQSLYQ DFENCVFQKN GCSKFLNPQQ DRQTQFSSFV ALRNLSWNEV LRKGTKYYSE EFSKFCDQKM YCINTSLKWT
501: RPWPEQLLQA FFVAAKCMWL LHLLAFSFNP PLGILRVEEN KTFDPQYMED MCPRSQGPRR VKIMVMPGFY VQDRVLRCKV LCRYKSAA

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.