Factsheet for VIT_02s0241g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19343	Canola	cytosol	14.29	62.96
KRH60459	Soybean	nucleus	57.14	61.68
Solyc08g079510.2.1	Tomato	plastid	58.19	58.56
PGSC0003DMT400010099	Potato	plastid	58.19	58.07
KRH41761	Soybean	plastid	59.87	57.81
CDY31261	Canola	nucleus, plastid	53.78	53.56
Bra016777.1-P	Field mustard	nucleus, plastid	53.99	51.92
AT1G12330.1	Thale cress	nucleus	54.62	51.49
CDY21046	Canola	nucleus, plastid	47.9	51.47
CDX98071	Canola	nucleus, plastid	49.58	50.97
Bra019759.1-P	Field mustard	plastid	53.99	50.49
CDY30072	Canola	nucleus, plastid	54.2	50.19
CDY53856	Canola	cytosol, plastid	30.46	45.89
GSMUA_Achr5P18790_001	Banana	mitochondrion	30.25	40.22
GSMUA_Achr8P19390_001	Banana	plastid	33.4	39.95
Bra028382.1-P	Field mustard	cytosol	27.94	38.89
TraesCS4D01G224300.1	Wheat	peroxisome, plastid	33.4	36.55
Zm00001d028423_P001	Maize	plastid	32.77	36.28
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	33.19	36.16
KXG39773	Sorghum	cytosol, nucleus, plastid	33.19	35.99
TraesCS4B01G224000.1	Wheat	plastid	33.19	35.67
Zm00001d047916_P001	Maize	plastid	31.93	35.43
Os03t0249100-01	Rice	plasma membrane	32.35	34.61
VIT_06s0004g01680.t01	Wine grape	cytosol	33.61	27.07
HORVU4Hr1G063050.1	Barley	mitochondrion	13.45	24.24

Protein Annotations

EntrezGene:100260132	wikigene:100260132	MapMan:35.1	EMBL:AM433873	ProteinID:CAN82555	ProteinID:CAN82555.1
ProteinID:CCB47502	ProteinID:CCB47502.1	ncoils:Coil	UniProt:F6H5L3	EMBL:FN595238	EntrezGene:LOC100260132
wikigene:LOC100260132	PANTHER:PTHR31029	PANTHER:PTHR31029:SF4	UniParc:UPI000210A383	ArrayExpress:VIT_02s0241g00060	EnsemblPlantsGene:VIT_02s0241g00060
EnsemblPlants:VIT_02s0241g00060.t01	RefSeq:XP_002266562	RefSeq:XP_002266562.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:4713635..4718407

Molecular Weight (calculated)

53918.4 Da

IEP (calculated)

9.408

GRAVY (calculated)

-0.479

Length

476 amino acids

Sequence
(BLAST)

001: MAPSSSSSSP SSSRASPSRP PPSPRSPHFT PIQECEREEQ EDEVTPSSCT DKGDPSKHHP TPIHKSDKNG KQSTRKRTDS DSLYEDDRTV SCNKCRPSAR
101: EKISVVPLDN AGMNRNSSSL ASPNGIFKSI LSSFTRKSPR TSDTSWTARE EHWKIAVAEL SHKLIQATRK RDEALLEASR LKYSMAELEK KLNKLEVYCH
201: NLKSGLDVCS GNSPYRPRKD QQIEANHFKI RDHDKVIEHF LVAVSEARSS IRLLSRSLTL QLRQIGGKVY ERISLLLQPY DVKLSLSKNP RTLLVYLEAL
301: LSKAFFEDFE SVGFQKNASN QILNPIERCE ANYASFNILQ GLTWDEVLNK GTRHFSEEFS KFCDRKMSEI VAMLAWNRAW TEPLLQAFFS ASKSVWLVHL
401: LAMSVHPSLP IFRVETGTKF DTVYMDDMGG DKARRLVPVM VRIMVAPGFY VYGNVVKCKV LCSDAHKMFF LSLTFL

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.