Factsheet for PGSC0003DMT400032824

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400052428
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40540.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT5G40540.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT5G40540.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT5G40540.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT5G40540.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT5G40540.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT5G40540.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT5G40540.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT5G40540.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT5G50180.1	PGSC0003DMT400052428	AT3G54120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093410.2.1	Tomato	cytosol	99.15	99.15
VIT_14s0066g00370.t01	Wine grape	cytosol	89.24	89.49
VIT_17s0000g09290.t01	Wine grape	cytosol	85.55	85.8
KRH56528	Soybean	cytosol	83.0	84.68
KRG93193	Soybean	cytosol	74.22	84.24
KRH54319	Soybean	cytosol	83.57	83.81
KRG94025	Soybean	cytosol	81.87	83.05
KRH63627	Soybean	cytosol	82.15	82.39
KRH07131	Soybean	cytosol	81.3	82.23
AT5G50180.1	Thale cress	cytosol	80.45	82.08
Bra000612.1-P	Field mustard	cytosol	80.74	81.2
CDY34048	Canola	cytosol	80.74	81.2
CDY64638	Canola	cytosol	80.74	81.2
GSMUA_Achr6P06670_001	Banana	cytosol	80.74	80.97
KXG27334	Sorghum	cytosol	77.9	80.17
AT5G40540.1	Thale cress	cytosol	79.6	79.6
Os02t0594100-01	Rice	cytosol	79.32	79.55
CDY36362	Canola	cytosol	78.47	79.37
Zm00001d050947_P007	Maize	cytosol	79.32	79.32
TraesCS6D01G192100.1	Wheat	cytosol	78.47	79.14
TraesCS6A01G208500.1	Wheat	cytosol	78.47	79.14
Bra025563.1-P	Field mustard	cytosol	78.19	79.08
CDY42570	Canola	cytosol	77.9	78.8
HORVU6Hr1G053310.1	Barley	cytosol	78.47	78.69
CDY13723	Canola	cytosol	79.32	78.65
GSMUA_AchrUn_...	Banana	cytosol	47.31	78.4
AT3G27560.1	Thale cress	cytosol	79.04	78.37
GSMUA_Achr9P01860_001	Banana	cytosol	77.9	78.35
TraesCS6B01G237600.2	Wheat	cytosol	78.47	78.25
Bra025286.1-P	Field mustard	cytosol	78.75	78.09
EES05353	Sorghum	cytosol	77.34	77.56
GSMUA_AchrUn_...	Banana	cytosol	33.43	75.64
CDX83708	Canola	cytosol	76.77	74.45
PGSC0003DMT400032959	Potato	cytosol	43.34	41.13
PGSC0003DMT400060698	Potato	cytosol	37.11	38.53
PGSC0003DMT400034519	Potato	cytosol	35.13	36.69
PGSC0003DMT400007577	Potato	cytosol	34.56	32.88
PGSC0003DMT400062959	Potato	cytosol, mitochondrion	32.58	32.76
PGSC0003DMT400022377	Potato	cytosol	29.75	32.51
PGSC0003DMT400007578	Potato	cytosol	34.56	30.5
PGSC0003DMT400033356	Potato	cytosol, plastid	33.43	24.38
PGSC0003DMT400076363	Potato	cytosol	34.28	24.01
PGSC0003DMT400007574	Potato	cytosol	19.26	21.86
PGSC0003DMT400047982	Potato	cytosol	34.84	21.81
PGSC0003DMT400048730	Potato	cytosol	33.99	21.35

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102581793	MapMan:18.4.1.30	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1AY48	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400012606
PGSC:PGSC0003DMG400012606	EnsemblPlants:PGSC0003DMT400032824	PIRSF:PIRSF000654	PRINTS:PR00109	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR44258	PANTHER:PTHR44258:SF2	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002947EF5	RefSeq:XP_006338623.1	SEG:seg

Description

Protein kinase atn1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012606]

Coordinates

chr2:+:47466899..47471435

Molecular Weight (calculated)

39894.2 Da

IEP (calculated)

7.386

GRAVY (calculated)

-0.294

Length

353 amino acids

Sequence
(BLAST)

001: MGSANGFYSG EEEFNLETKW LIDPKLLFVG PKIGEGAHAK VYEGKYRNQN VAIKIVHKGE TPEEIAKRES RFGREVAMLS RVQHKNLVKF IGACKEPVMV
101: IVTELLLGGT LRKYLLNMRP RCLDTGVAIR FALDIARAME CLHSHGIIHR DLKPENLLLT ADHKTVKLAD FGLAREESLT EMMTAETGTY RWMAPELYST
201: VTLRHGEKKH YNHKVDAYSF AIVLWELVHN KLPFEGMSNL QAAYAAAFKN VRPSADDLPE DLAVIVTSCW KEDPNTRPNF TQIIQMLLHF LSSVSPPEPV
301: IPARIFTSEN HVLPPESPGT SSLMSKRDDS GETPKTPMEN QPRGFFFCFN QCY

Best Arabidopsis Sequence Match ( AT5G50180.1 )
(BLAST)

001: MDSLTGFRME PKWQIDPQLL FVGPKIGEGA HAKVYEGKYK NQTVAIKIVH RGETPEEIAK RDSRFLREVE MLSRVQHKNL VKFIGACKEP VMVIVTELLQ
101: GGTLRKYLLN LRPACLETRV AIGFALDIAR GMECLHSHGI IHRDLKPENL LLTADHKTVK LADFGLAREE SLTEMMTAET GTYRWMAPEL YSTVTLRLGE
201: KKHYNHKVDA YSFAIVLWEL LHNKLPFEGM SNLQAAYAAA FKNVRPSAES LPEELGDIVT SCWNEDPNAR PNFTHIIELL LNYLSKVGSP ISAIPQRILA
301: SKNTLLPPDS PGTSSLMAKL DECGETPKAK SEDKRKGLFF CFNQCY

Arabidopsis Description

At5g50180 [Source:UniProtKB/TrEMBL;Acc:Q9FGS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.