CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40540.1	KRG89812	AT2G41100.1	17360592
AT5G40540.1	KRG94975	AT2G41100.1	17360592
AT5G40540.1	KRH18664	AT2G41100.1	17360592
AT5G40540.1	KRH31638	AT4G14640.1	17360592
AT5G40540.1	KRH69070	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93193	Soybean	cytosol	85.84	95.5
KRG94025	Soybean	cytosol	89.31	88.79
KRH07131	Soybean	cytosol	88.73	87.97
VIT_14s0066g00370.t01	Wine grape	cytosol	85.84	84.38
PGSC0003DMT400032824	Potato	cytosol	84.68	83.0
Solyc02g093410.2.1	Tomato	cytosol	84.39	82.72
KRH54319	Soybean	cytosol	82.37	80.97
KRH63627	Soybean	cytosol	81.79	80.4
Bra025563.1-P	Field mustard	cytosol	79.48	78.8
CDY36362	Canola	cytosol	78.9	78.22
CDY42570	Canola	cytosol	78.61	77.94
GSMUA_Achr6P06670_001	Banana	cytosol	78.61	77.27
AT5G40540.1	Thale cress	cytosol	78.03	76.49
AT3G27560.1	Thale cress	cytosol	78.61	76.4
CDY13723	Canola	cytosol	78.32	76.12
Bra025286.1-P	Field mustard	cytosol	78.32	76.12
GSMUA_AchrUn_...	Banana	cytosol	46.53	75.59
GSMUA_Achr9P01860_001	Banana	cytosol	76.01	74.93
KXG27334	Sorghum	cytosol	73.41	74.05
Os02t0594100-01	Rice	cytosol	74.57	73.3
TraesCS6A01G208500.1	Wheat	cytosol	73.99	73.14
TraesCS6D01G192100.1	Wheat	cytosol	73.99	73.14
Zm00001d050947_P007	Maize	cytosol	74.57	73.09
HORVU6Hr1G053310.1	Barley	cytosol	73.99	72.73
GSMUA_AchrUn_...	Banana	cytosol	32.66	72.44
TraesCS6B01G237600.2	Wheat	cytosol	73.99	72.32
CDX83708	Canola	cytosol	75.72	71.98
EES05353	Sorghum	cytosol	72.54	71.31
KRH40751	Soybean	cytosol	62.14	58.11
KRH76113	Soybean	cytosol	60.4	56.33
KRH65437	Soybean	cytosol	60.4	56.33
KRH13893	Soybean	cytosol	34.39	36.28
KRH13899	Soybean	cytosol	34.39	36.28
KRH43461	Soybean	cytosol	34.1	35.98
KRH08313	Soybean	cytosol	40.75	35.52
KRH57063	Soybean	mitochondrion	36.13	35.51
KRH27396	Soybean	cytosol	27.75	35.42
KRH03300	Soybean	peroxisome	36.42	35.1
KRH63510	Soybean	mitochondrion	35.55	34.45
KRH11513	Soybean	mitochondrion	37.57	34.39
KRH36528	Soybean	mitochondrion	37.28	34.22
KRH54406	Soybean	mitochondrion, peroxisome	33.53	33.92
KRH51152	Soybean	mitochondrion	37.28	33.86
KRH02003	Soybean	mitochondrion	37.28	33.86
KRH60100	Soybean	cytosol	35.26	29.33
KRH41382	Soybean	nucleus	35.26	29.33
KRH10889	Soybean	cytosol	35.84	26.84
KRH21427	Soybean	cytosol	35.84	26.78
KRH20446	Soybean	cytosol, plastid	34.68	24.29
KRH50054	Soybean	cytosol, plastid	34.68	24.1
KRH60972	Soybean	cytosol	31.21	20.3
KRG91637	Soybean	cytosol	32.08	19.93
KRH36118	Soybean	cytosol	33.53	19.83
KRH76579	Soybean	cytosol	32.66	19.79
KRG90640	Soybean	plastid	33.24	19.73
KRH35162	Soybean	cytosol	32.66	19.38
KRH28871	Soybean	cytosol	32.37	18.06

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100792887	MapMan:18.4.1.30	Gene3D:3.30.200.20	EMBL:ACUP02002778	EnsemblPlantsGene:GLYMA_05G002600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004871
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	UniProt:I1K1M3	InterPro:IPR000719
EnsemblPlants:KRH56528	ProteinID:KRH56528	ProteinID:KRH56528.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654
PRINTS:PR00109	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR44258	PANTHER:PTHR44258:SF2
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0002339E01	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:186698..190825

Molecular Weight (calculated)

38834.0 Da

IEP (calculated)

7.290

GRAVY (calculated)

-0.218

Length

346 amino acids

Sequence
(BLAST)

001: MGSGNEVHSV GDFNLDSKWL VDPKQLFIGP KIGEGAHAKV YEGKYKNQNV AVKIINKGET LEEISRREAR FAREVAMLSR VQHKNLVKFI GACKEPVMVI
101: VTELLLGGTL RKYLLNMRPK CLDMTVAIGF ALDIARAMEC LHSHGIIHRD LKPDNLILTD DHKAVKLADF GLAREESLTE MMTAETGTYR WMAPELYSTV
201: TLRQGEKKHY NHKVDAYSFA IVLWELIHNK LPFEGMSNLQ AAYAAAFKNT RPSAEDLPED LALIVTSCWK EDPNDRPNFS QIIQMLLRYL STVSPPEPVV
301: PLRITSSENA VLPPESPGTS ALMLGRDGSR ETTTAKGFFF CFNQCY

Best Arabidopsis Sequence Match ( AT3G27560.1 )
(BLAST)

001: MGSASGFYSN EEFELDPKWL VDPRHLFVGP KIGEGAHAKV YEGKYRNQTV AIKIIKRGES PEEIAKRDNR FAREIAMLSK VQHKNLVKFI GACKEPMMVI
101: VTELLLGGTL RKYLVSLRPK RLDIRLAVGF ALDIARAMEC LHSHGIIHRD LKPENLILSA DHKTVKLADF GLAREESLTE MMTAETGTYR WMAPELYSTV
201: TLRQGEKKHY NHKVDAYSFA IVLWELILNK LPFEGMSNLQ AAYAAAFKNL RPSAEDLPGD LEMIVTSCWK EDPNERPNFT EIIQMLLRYL TTVSAPQIIP
301: PPNRRVFSSE NIVLSPESPG TCSLMSVRDG DVSRQTVNTA DSSEKQTKGS FFSCCS

Arabidopsis Description

ATN1AT3g27560/MMJ24_11 [Source:UniProtKB/TrEMBL;Acc:Q9LT56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.