CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40540.1	KRG89812	AT2G41100.1	17360592
AT5G40540.1	KRG94975	AT2G41100.1	17360592
AT5G40540.1	KRH18664	AT2G41100.1	17360592
AT5G40540.1	KRH31638	AT4G14640.1	17360592
AT5G40540.1	KRH69070	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94025	Soybean	cytosol	96.56	96.84
KRG93193	Soybean	cytosol	79.37	89.07
KRH56528	Soybean	cytosol	87.97	88.73
VIT_14s0066g00370.t01	Wine grape	cytosol	84.24	83.52
Solyc02g093410.2.1	Tomato	cytosol	82.23	81.3
PGSC0003DMT400032824	Potato	cytosol	82.23	81.3
KRH54319	Soybean	cytosol	80.8	80.11
KRH63627	Soybean	cytosol	79.66	78.98
CDY36362	Canola	cytosol	77.94	77.94
Bra025563.1-P	Field mustard	cytosol	77.94	77.94
CDY42570	Canola	cytosol	77.65	77.65
AT5G40540.1	Thale cress	cytosol	77.36	76.49
AT3G27560.1	Thale cress	cytosol	77.65	76.12
KXG27334	Sorghum	cytosol	74.5	75.8
GSMUA_Achr6P06670_001	Banana	cytosol	76.22	75.57
CDY13723	Canola	cytosol	77.08	75.56
Zm00001d050947_P007	Maize	cytosol	75.93	75.07
Bra025286.1-P	Field mustard	cytosol	76.5	75.0
GSMUA_Achr9P01860_001	Banana	cytosol	75.36	74.93
TraesCS6D01G192100.1	Wheat	cytosol	75.07	74.86
TraesCS6A01G208500.1	Wheat	cytosol	75.07	74.86
Os02t0594100-01	Rice	cytosol	75.07	74.43
HORVU6Hr1G053310.1	Barley	cytosol	75.07	74.43
TraesCS6B01G237600.2	Wheat	cytosol	75.07	74.01
EES05353	Sorghum	cytosol	73.93	73.3
GSMUA_AchrUn_...	Banana	cytosol	44.41	72.77
GSMUA_AchrUn_...	Banana	cytosol	32.38	72.44
CDX83708	Canola	cytosol	74.21	71.15
KRH40751	Soybean	cytosol	59.6	56.22
KRH65437	Soybean	cytosol	58.45	54.99
KRH76113	Soybean	cytosol	58.45	54.99
KRH13899	Soybean	cytosol	33.24	35.37
KRH13893	Soybean	cytosol	33.24	35.37
KRH08313	Soybean	cytosol	39.83	35.01
KRH57063	Soybean	mitochondrion	34.96	34.66
KRH43461	Soybean	cytosol	32.38	34.45
KRH03300	Soybean	peroxisome	35.24	34.26
KRH63510	Soybean	mitochondrion	34.96	34.17
KRH54406	Soybean	mitochondrion, peroxisome	33.24	33.92
KRH11513	Soybean	mitochondrion	36.1	33.33
KRH27396	Soybean	cytosol	25.79	33.21
KRH36528	Soybean	mitochondrion	35.82	33.16
KRH02003	Soybean	mitochondrion	35.53	32.55
KRH51152	Soybean	mitochondrion	35.53	32.55
KRH60100	Soybean	cytosol	35.53	29.81
KRH41382	Soybean	nucleus	35.53	29.81
KRH10889	Soybean	cytosol	33.52	25.32
KRH21427	Soybean	cytosol	33.52	25.27
KRH50054	Soybean	cytosol, plastid	32.66	22.89
KRH20446	Soybean	cytosol, plastid	32.38	22.87
KRH60972	Soybean	cytosol	31.52	20.68
KRH36118	Soybean	cytosol	34.1	20.34
KRH76579	Soybean	cytosol	33.24	20.32
KRG90640	Soybean	plastid	33.24	19.9
KRG91637	Soybean	cytosol	31.23	19.57
KRH35162	Soybean	cytosol	32.09	19.21
KRH28871	Soybean	cytosol	32.66	18.39

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100808329	MapMan:18.4.1.30	Gene3D:3.30.200.20	EMBL:ACUP02009938	EnsemblPlantsGene:GLYMA_16G069200
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004871
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	UniProt:I1MLT0	InterPro:IPR000719
EnsemblPlants:KRH07131	ProteinID:KRH07131	ProteinID:KRH07131.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654
PRINTS:PR00109	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR44258	PANTHER:PTHR44258:SF2
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0001BA8F24	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:6906479..6910608

Molecular Weight (calculated)

39304.7 Da

IEP (calculated)

8.144

GRAVY (calculated)

-0.279

Length

349 amino acids

Sequence
(BLAST)

001: MGSGNEVHSV VEFNLDAKWL IDPKQLFVGP KIGEGAHAKV YEGKYKNQNV AVKIVNKGET PEQISRREAR FAREIAMLSR VQHKNLVKFI GACKEPVMVI
101: VTELLLGGTL RKHLWSIRPK CLDMRIAVGF ALDIARAMEC LHSHGIIHRD LKPDNLILTE DHKTVKLADF GLAREESLTE MMTAETGTYR WMAPELYSTV
201: TLRQGEKKHY NHKVDAYSFA IVLWELIHNK LPFEGMSNLQ AAYAAAFKNT RPSADELPED LALIVTSCWK EDPNDRPNFS QIIEMLLRYL TTISPSEPVV
301: PMRMMSKNAV LPPESPGTSA LMARRDDSGE TPKGGNIEGR SKGFFFCCY

Best Arabidopsis Sequence Match ( AT5G40540.1 )
(BLAST)

001: MGSVTGFYSN EVFELDPKWV VDPQHLFVGP KIGEGAHAKI YEGKYKNKTV AIKIVKRGES PEEIAKRESR FAREVSMLSR VQHKNLVKFI GACKEPIMVI
101: VTELLLGGTL RKYLVSLRPG SLDIRVAVGY ALDIARAMEC LHSHGVIHRD LKPESLILTA DYKTVKLADF GLAREESLTE MMTAETGTYR WMAPELYSTV
201: TLRHGEKKHY NHKVDAYSFA IVLWELIHNK LPFEGMSNLQ AAYAAAFKNV RPSADDLPKD LAMIVTSCWK EDPNDRPNFT EIIQMLLRCL STISSTELVP
301: PAIKRVFSSE NTVLPPESPG TCSLMTVRDK DQIPTDANSA QNEVRGSFFF FCC

Arabidopsis Description

Protein kinase ATN1 [Source:UniProtKB/TrEMBL;Acc:Q9FM43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.