Factsheet for PGSC0003DMT400027549

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12350.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT3G12350.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT3G12350.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT3G12350.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT3G12350.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT3G12350.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT3G12350.1	PGSC0003DMT400097662	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09030.t01	Wine grape	cytosol	58.99	57.36
KRH05573	Soybean	cytosol	52.19	53.6
KRG88766	Soybean	cytosol	51.1	53.56
Bra000633.1-P	Field mustard	cytosol	43.2	50.26
CDY34020	Canola	cytosol	43.86	49.51
CDX83150	Canola	cytosol	42.76	48.75
AT3G12350.1	Thale cress	cytosol	44.3	47.87
GSMUA_Achr7P26160_001	Banana	nucleus	45.18	43.92
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	33.99	40.16
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	33.99	39.95
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	33.99	39.95
Os12t0511000-01	Rice	extracellular	34.43	39.35
KXG23560	Sorghum	extracellular, plasma membrane, plastid	33.55	39.13
Zm00001d035303_P001	Maize	cytosol, plasma membrane, plastid	33.99	38.85

Protein Annotations

EnsemblPlants:PGSC0003DMT400027549	EnsemblPlantsGene:PGSC0003DMG400010620	EntrezGene:102588172	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PFAM:PF12937	PFscan:PS50181
PGSC:PGSC0003DMG400010620	RefSeq:XP_006356855.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00029654F4
UniProt:M1APT9	MapMan:35.1	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010620]

Coordinates

chr4:+:66913518..66916896

Molecular Weight (calculated)

51733.3 Da

IEP (calculated)

5.062

GRAVY (calculated)

-0.352

Length

456 amino acids

Sequence
(BLAST)

001: MAKPDEIHTI SLSFTDFPED VQLCILSFLT PSDISNFACT SKRFVSLCRD DPRLWFSMCN RKWGSKTQIN KWGSGKISYK LLYNTLLEYE NLIGFWRRSG
101: AESDSPLIFF EWGPFHIAGS RVKPSRTGTY EVIKLPFLWM GITSKGEIVN YLDPVGKVEL SENVMNLDDL GVVESELVPV NVNFVGRTHV VVEENGTAFG
201: YSCNSPQNRG FKKVSSSGNM KEEEYEDLCV SPGSLPDRLM SDIYQYFANK TSPGGNGSAR RQRRRERERQ GRRKWEPEDY VKIVNCSPTP ARPLQGLWKG
301: FRDETTLEFF LVSYDDIGGI ACRRLVELCK PFSAYAPVFW TSNTTFIESP LSSEEENIYE SRMHIQPLAE ADDLCEILPS ADKRVILCML CMNSSYDLVI
401: PDLAGSTVNP RQAEGRIWQY ENGTFGFGFL RDNHVIDLRC IAQNGRILEA ADISGE

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.