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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX83150 Canola cytosol 69.91 73.75
CDY34020 Canola cytosol 70.38 73.51
Bra000633.1-P Field mustard cytosol 67.77 72.96
VIT_18s0001g09030.t01 Wine grape cytosol 50.47 45.42
KRG88766 Soybean cytosol 45.73 44.37
PGSC0003DMT400027549 Potato cytosol 47.87 44.3
KRH05573 Soybean cytosol 46.45 44.14
GSMUA_Achr7P26160_001 Banana nucleus 43.13 38.81
KXG23560 Sorghum extracellular, plasma membrane, plastid 32.46 35.04
TraesCS5D01G114900.1 Wheat extracellular, peroxisome, plastid 31.52 34.46
TraesCS5B01G107300.1 Wheat cytosol, peroxisome, plastid 31.52 34.28
Zm00001d035303_P001 Maize cytosol, plasma membrane, plastid 32.23 34.09
TraesCS5A01G103000.1 Wheat extracellular, peroxisome, plastid 31.28 34.02
Os12t0511000-01 Rice extracellular 31.75 33.58
Protein Annotations
Gene3D:1.20.1280.50MapMan:35.1EntrezGene:820413ProteinID:AAG51006.1ProteinID:AEE75186.1ArrayExpress:AT3G12350
EnsemblPlantsGene:AT3G12350RefSeq:AT3G12350TAIR:AT3G12350RefSeq:AT3G12350-TAIR-GEnsemblPlants:AT3G12350.1TAIR:AT3G12350.1
EMBL:AY086584Unigene:At.27112ProteinID:BAB03143.1EMBL:BT001925InterPro:F-box-like_dom_sfInterPro:F-box_dom
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0008150InterPro:IPR001810RefSeq:NP_566421.1
PFAM:PF12937PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293
PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PFscan:PS50181
UniProt:Q84WW1SUPFAM:SSF81383UniParc:UPI000000BD4ASEG:seg::
Description
F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
Coordinates
chr3:+:3931468..3933404
Molecular Weight (calculated)
47758.9 Da
IEP (calculated)
5.749
GRAVY (calculated)
-0.377
Length
422 amino acids
Sequence
(BLAST)
001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.