Factsheet for Bra000633.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12350.1	Bra000214.1-P	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83150	Canola	cytosol	95.41	93.5
CDY34020	Canola	cytosol	93.37	90.59
AT3G12350.1	Thale cress	cytosol	72.96	67.77
VIT_18s0001g09030.t01	Wine grape	cytosol	52.3	43.71
PGSC0003DMT400027549	Potato	cytosol	50.26	43.2
KRG88766	Soybean	cytosol	46.68	42.07
KRH05573	Soybean	cytosol	46.94	41.44
KXG23560	Sorghum	extracellular, plasma membrane, plastid	37.5	37.6
GSMUA_Achr7P26160_001	Banana	nucleus	44.13	36.89
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	36.22	36.79
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	36.22	36.6
Os12t0511000-01	Rice	extracellular	37.24	36.59
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	35.46	35.82
Zm00001d035303_P001	Maize	cytosol, plasma membrane, plastid	35.97	35.34

Protein Annotations

EnsemblPlants:Bra000633.1	EnsemblPlants:Bra000633.1-P	EnsemblPlantsGene:Bra000633	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PFAM:PF12937	PFscan:PS50181
SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002540208	UniProt:M4C8V5	MapMan:35.1

Description

AT3G12350 (E=1e-078) | F-box family protein

Coordinates

chrA03:-:12148182..12149443

Molecular Weight (calculated)

44656.3 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.385

Length

392 amino acids

Sequence
(BLAST)

001: MALALCDIPE DLQLRILSFL SPTEICSFAC TSKRFASLCR EDRKIWHAVC DRRWGKKTQI QKWGNGRIAY KLLYRTLKRL ENLIGFWRLC GRANPADSSP
101: PLVFFEWGSS FVLGSRVLAI NDDTYRVRKT PFLVLGISSE GRTESFLDLD GNHRSGVSVD LSDLERSSLV PVDVNFMGNG HIMVEEQKSK GSSSGDDDES
201: EDVVSEMYTQ LANRTSPGGD RRRKRKKEKE RQARIKWEPE HFIKVSDFSP TLAKPLQGLW KGFCEGRNLE LYLVKYDEVG GVICKKVEDL SLSRQTSPVF
301: WTPNHAFIRS PFSVEEEMIL DSRIRITPLH GEVHEQVISG MLYMNSSYDP GEGRVWLYEN GTFGFGFLRD QFITDLKRVA LEDGCLADVL DA

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.