Factsheet for Zm00001d035303_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12350.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT3G12350.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT3G12350.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT3G12350.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT3G12350.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT3G12350.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT3G12350.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT3G12350.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT3G12350.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT3G12350.1	Zm00001d052415_P001	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23560	Sorghum	extracellular, plasma membrane, plastid	87.47	89.26
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	71.43	73.45
Os12t0511000-01	Rice	extracellular	73.43	73.43
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	70.93	73.32
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	71.18	73.2
KRG88766	Soybean	cytosol	41.85	38.39
KRH05573	Soybean	cytosol	42.36	38.06
GSMUA_Achr7P26160_001	Banana	nucleus	43.11	36.67
VIT_18s0001g09030.t01	Wine grape	cytosol	42.61	36.25
Bra000633.1-P	Field mustard	cytosol	35.34	35.97
CDY34020	Canola	cytosol	35.84	35.4
CDX83150	Canola	cytosol	35.09	35.0
PGSC0003DMT400027549	Potato	cytosol	38.85	33.99
AT3G12350.1	Thale cress	cytosol	34.09	32.23

Protein Annotations

EMBL:BT034537	EnsemblPlants:Zm00001d035303_P001	EnsemblPlants:Zm00001d035303_T001	EnsemblPlantsGene:Zm00001d035303	EntrezGene:100192530	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	ProteinID:AQK78655.1	SEG:seg	SUPFAM:SSF81383
UniParc:UPI00017B6404	UniProt:B4FBP9	MapMan:35.1	:	:	:

Description

F-box protein

Coordinates

chr6:+:20251536..20254777

Molecular Weight (calculated)

42743.5 Da

IEP (calculated)

5.815

GRAVY (calculated)

-0.110

Length

399 amino acids

Sequence
(BLAST)

001: MGSIPAAAAG PGTELEDLPE DALLCILVLL APPDAAAAAC SCRRLAAAAS SPALPLALAL RLGLPPPPPS HPLLPAAPCP ADARRLLRSL HRLRRLLGLW
101: RRLPSGSGYA SSSLSSPSLA AFEWAPRATL AASFLAPSAH GDVGVSKSPF VTLSIEESGD TVAVVGEVSV CVNFVGNNHI VVEAVVGEDE EFEMVSGSPP
201: EEIYAHFANR RSPGAGRRRR GKQGRKGGGM EAEHFVRIAD TEPTKARPLQ GLWKGICEDR TLEFYLVTYD DIGGVTCRRF RDTQSQNSGY SPVFWTTDTT
301: FLEPPFSEQE LVNYASRDHI QGVTSNHAGA ENRVVSRILR INSSYDVVDT HLSTPLDDGR SVEGRIWLYE DGTFGFGFVG SNSIIDLRHV SSAGCILDT

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.