Factsheet for VIT_18s0001g09030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12350.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT3G12350.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027549	Potato	cytosol	57.36	58.99
KRG88766	Soybean	cytosol	53.09	57.24
KRH05573	Soybean	cytosol	53.3	56.31
Bra000633.1-P	Field mustard	cytosol	43.71	52.3
CDX83150	Canola	cytosol	44.56	52.25
CDY34020	Canola	cytosol	44.56	51.73
AT3G12350.1	Thale cress	cytosol	45.42	50.47
GSMUA_Achr7P26160_001	Banana	nucleus	48.61	48.61
KXG23560	Sorghum	extracellular, plasma membrane, plastid	36.46	43.73
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	35.82	43.52
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	35.82	43.3
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	35.39	42.78
Zm00001d035303_P001	Maize	cytosol, plasma membrane, plastid	36.25	42.61
Os12t0511000-01	Rice	extracellular	36.03	42.36

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100245525	wikigene:100245525	MapMan:35.1	EMBL:AM475696	ProteinID:CAN72848
ProteinID:CAN72848.1	ProteinID:CCB45748	ProteinID:CCB45748.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H197
EMBL:FN595227	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	EntrezGene:LOC100245525
wikigene:LOC100245525	PFAM:PF00646	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00015C806E
ArrayExpress:VIT_18s0001g09030	EnsemblPlantsGene:VIT_18s0001g09030	EnsemblPlants:VIT_18s0001g09030.t01	unigene:Vvi.12555	RefSeq:XP_002283336	RefSeq:XP_002283336.1

Description

No Description!

Coordinates

chr18:+:7533763..7536354

Molecular Weight (calculated)

52828.8 Da

IEP (calculated)

6.445

GRAVY (calculated)

-0.225

Length

469 amino acids

Sequence
(BLAST)

001: MSNLTTDAVT SVSFSDFPED VQLCILSFLT PSEIATFACT SKRFLSLCTC DSKLWFTLCD RRWGSKTQIK KWGSGKITYR LLYRTLIEWE NLIGFWRRSG
101: QVTLGVASPP LIFFEWCPSF IIGSRVSPSR LGTYHVIKAP FLCMSITPEG ETMNFLDPDG KIESSEDFVN AVQAGFLEND LIPVHVSFMG KNHVVVEENL
201: SFTSLNSQEP KNTGFRRSSS SGNVRAEDIG VVEDMIGAES GSPGSLPDRF MSEIYQYFAN RTSPGGERAS RRQRKREKAR QGRRKWMPEH FVKIVNCSPT
301: PSRPLQGLWK GISDDKNLYF FLVAYDDIGG IACRTIGDSS KPLSGYSPVF WTSKTTFLEA PFSPEEEYLY DSRIHLRPLA TADHIHEHHP LTENEVVSHI
401: LCINSSYDLV IPDLAGTSAN PRDVEGRIWL YESGTFGFGF LRNHFIVDLK HIAQHGCLLE AMELCSDLC

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.