Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG88766 | Soybean | cytosol | 45.63 | 49.2 |
| VIT_18s0001g09030.t01 | Wine grape | cytosol | 48.61 | 48.61 |
| KRH05573 | Soybean | cytosol | 45.84 | 48.42 |
| PGSC0003DMT400027549 | Potato | cytosol | 43.92 | 45.18 |
| KXG23560 | Sorghum | extracellular, plasma membrane, plastid | 37.1 | 44.5 |
| Os12t0511000-01 | Rice | extracellular | 37.74 | 44.36 |
| Bra000633.1-P | Field mustard | cytosol | 36.89 | 44.13 |
| CDY34020 | Canola | cytosol | 37.31 | 43.32 |
| TraesCS5B01G107300.1 | Wheat | cytosol, peroxisome, plastid | 35.82 | 43.3 |
| TraesCS5D01G114900.1 | Wheat | extracellular, peroxisome, plastid | 35.61 | 43.26 |
| CDX83150 | Canola | cytosol | 36.89 | 43.25 |
| AT3G12350.1 | Thale cress | cytosol | 38.81 | 43.13 |
| Zm00001d035303_P001 | Maize | cytosol, plasma membrane, plastid | 36.67 | 43.11 |
| TraesCS5A01G103000.1 | Wheat | extracellular, peroxisome, plastid | 35.39 | 42.78 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P26160_001 | EnsemblPlants:GSMUA_Achr7T26160_001 | EnsemblPlantsGene:GSMUA_Achr7G26160_001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PFAM:PF00646 | PFscan:PS50181 |
| SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0002965EBF | UniProt:M0TKV2 | MapMan:35.1 | : |
Description
Putative F-box protein At3g12350 [Source:GMGC_GENE;Acc:GSMUA_Achr7G26160_001]
Coordinates
chr7:+:27544239..27547737
Molecular Weight (calculated)
53252.9 Da
IEP (calculated)
8.261
GRAVY (calculated)
-0.404
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPPAPAM SFSDFPEDIQ LNILSFLSPT EISAFACTSR RFAALCGAAA HESPLWVFMC ERRWGFSTHL RSWSSSAAAG RRSPFARLYK ALDRWEDLIG
101: FWRRIGPGDP LLVFFEWGPS YIVGSRVSPS TEAARDGYGI LKVPFLWLGL SSHGEPGSFL HPGYPDLVPV TVSFMGRNHF VLEVNRGHDA NARAESSNWV
201: QKEVLRIEGT SPPDRLMSEI YQHFANRTSP IDGKPTRRQR KKEKERFERR RRWHAEHFVK ICNCYPTPER PLQGLWKGIS EDRVLEFYLV AYDDIGGITC
301: RRVGEAGGQF SCYSPVFWTS NTAFLESPFP REEQDLYGSR EHIRSVASDW RSTESEVVSR ILHVNSGCCD LVIRSLSDSS SSDPRNADGR IWEYDDGTFG
401: FGFLRNDYII DLKHVTLNGS LLDTVELPSL RTLATDKSRS FKKKPFSEKS PKNIISFIDK CTSGVRYLF
101: FWRRIGPGDP LLVFFEWGPS YIVGSRVSPS TEAARDGYGI LKVPFLWLGL SSHGEPGSFL HPGYPDLVPV TVSFMGRNHF VLEVNRGHDA NARAESSNWV
201: QKEVLRIEGT SPPDRLMSEI YQHFANRTSP IDGKPTRRQR KKEKERFERR RRWHAEHFVK ICNCYPTPER PLQGLWKGIS EDRVLEFYLV AYDDIGGITC
301: RRVGEAGGQF SCYSPVFWTS NTAFLESPFP REEQDLYGSR EHIRSVASDW RSTESEVVSR ILHVNSGCCD LVIRSLSDSS SSDPRNADGR IWEYDDGTFG
401: FGFLRNDYII DLKHVTLNGS LLDTVELPSL RTLATDKSRS FKKKPFSEKS PKNIISFIDK CTSGVRYLF
001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM
Arabidopsis Description
F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.