Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G107300.1 | Wheat | cytosol, peroxisome, plastid | 97.94 | 97.94 |
| TraesCS5D01G114900.1 | Wheat | extracellular, peroxisome, plastid | 97.42 | 97.93 |
| KXG23560 | Sorghum | extracellular, plasma membrane, plastid | 74.74 | 74.17 |
| Os12t0511000-01 | Rice | extracellular | 74.23 | 72.18 |
| Zm00001d035303_P001 | Maize | cytosol, plasma membrane, plastid | 73.45 | 71.43 |
| KRG88766 | Soybean | cytosol | 43.81 | 39.08 |
| KRH05573 | Soybean | cytosol | 43.3 | 37.84 |
| Bra000633.1-P | Field mustard | cytosol | 35.82 | 35.46 |
| GSMUA_Achr7P26160_001 | Banana | nucleus | 42.78 | 35.39 |
| VIT_18s0001g09030.t01 | Wine grape | cytosol | 42.78 | 35.39 |
| CDY34020 | Canola | cytosol | 36.08 | 34.65 |
| CDX83150 | Canola | cytosol | 35.31 | 34.25 |
| PGSC0003DMT400027549 | Potato | cytosol | 39.95 | 33.99 |
| AT3G12350.1 | Thale cress | cytosol | 34.02 | 31.28 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G103000.1 | EnsemblPlantsGene:TraesCS5A01G103000 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | SEG:seg | SUPFAM:SSF81383 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5A:+:158911635..158915280
Molecular Weight (calculated)
42256.2 Da
IEP (calculated)
5.822
GRAVY (calculated)
-0.144
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSLVAAAE TALEDLPEDA LLAILAFLAP ADAAAAACTC RALFAAASSP ALPLALALRL GLPPPRPSPE ACPASVRRLF RSLHRLRRLL GLWRRLPSSH
101: SGSPSLVAFE WAPRATLAAS LLAPSKRGLA VSKSPFVTLS VAESGDTVAA LGEVPVCVNF VGDNHIVVEA ASGEDEEEGM EGGSPPEEMY MHFANRRSPG
201: AGRRRRERQG RRKGGRMEPE HFVRIPDAEP TKARPLQGLW KGVCENKTLE FYIISYDDIG GMTCRRVSEN RGQNSGYSPV FWTTDATFLE PPFSEQELDR
301: YSCLEHIQVV TCGHTETWNK AVSRILCINS SFDLVHPHLL APFDDTSNVE GRIWLYEDGT FGFGFTGSNS IIDLNHVSMD GCIIDTSY
101: SGSPSLVAFE WAPRATLAAS LLAPSKRGLA VSKSPFVTLS VAESGDTVAA LGEVPVCVNF VGDNHIVVEA ASGEDEEEGM EGGSPPEEMY MHFANRRSPG
201: AGRRRRERQG RRKGGRMEPE HFVRIPDAEP TKARPLQGLW KGVCENKTLE FYIISYDDIG GMTCRRVSEN RGQNSGYSPV FWTTDATFLE PPFSEQELDR
301: YSCLEHIQVV TCGHTETWNK AVSRILCINS SFDLVHPHLL APFDDTSNVE GRIWLYEDGT FGFGFTGSNS IIDLNHVSMD GCIIDTSY
001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM
Arabidopsis Description
F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.