Factsheet for Os12t0511000-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12350.1	Os01t0267900-01	AT2G41090.1	17360592
AT3G12350.1	Os01t0279300-01	AT2G41090.1	17360592
AT3G12350.1	Os01t0810300-01	AT2G41090.1	17360592
AT3G12350.1	Os03t0319300-01	AT2G41090.1	17360592
AT3G12350.1	Os05t0491000-01	AT2G41090.1	17360592
AT3G12350.1	Os05t0491100-01	AT2G41090.1	17360592
AT3G12350.1	Os07t0687200-02	AT2G41090.1	17360592
AT3G12350.1	Os12t0603800-00	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23560	Sorghum	extracellular, plasma membrane, plastid	73.93	75.45
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	71.93	74.35
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	72.18	74.23
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	72.18	74.23
Zm00001d035303_P001	Maize	cytosol, plasma membrane, plastid	73.43	73.43
GSMUA_Achr7P26160_001	Banana	nucleus	44.36	37.74
KRG88766	Soybean	cytosol	40.85	37.47
Bra000633.1-P	Field mustard	cytosol	36.59	37.24
KRH05573	Soybean	cytosol	40.6	36.49
VIT_18s0001g09030.t01	Wine grape	cytosol	42.36	36.03
CDY34020	Canola	cytosol	35.59	35.15
CDX83150	Canola	cytosol	34.84	34.75
PGSC0003DMT400027549	Potato	cytosol	39.35	34.43
AT3G12350.1	Thale cress	cytosol	33.58	31.75

Protein Annotations

EMBL:AK241657	EnsemblPlants:Os12t0511000-01	EnsemblPlantsGene:Os12g0511000	EntrezGene:4352322	Gene3D:1.20.1280.50	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:F-box-like_dom_sf
ProteinID:ABA99041.1	ProteinID:BAT17327.1	RefSeq:XP_015620453.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0000680FEE
UniProt:Q2QQ09	MapMan:35.1	:	:	:	:

Description

F-box protein 656Similar to F-box domain containing protein, expressed. (Os12t0511000-01)

Coordinates

chr12:-:19684833..19687877

Molecular Weight (calculated)

42847.7 Da

IEP (calculated)

6.136

GRAVY (calculated)

-0.124

Length

399 amino acids

Sequence
(BLAST)

001: MEALPPVAVA GTVLEDLPED ALLAILALLA PTDAAAAACA CRRLAAAASS PSLPLALALR LGLPPPRPLL PASAARLLRS LHRLRRLLGL WRRLPSSSFS
101: GSGYRSTSSS SSLAAFEWAP GGTLAASLLA PSARGLAVAK SPFVTLSIDE TGETVAAMGD VPVSVNFVGN NHIVVEAAAA SSGDDDDEAA MEGGSPPEVM
201: YMHFANRRSP GAGRKRRSKQ GRRRGRAMEA EHFVRIADAE PTEARPLQGL WKGISESRTL EFYLVTYDDI GGITCRQVSD TRGQNSGFTP IFWTTNTTFL
301: EQPFSEKELD HYIRREHIQG VDSDHAATEN RAISRILCIN SSYDVVDHHL SAPLDDMRNV EGRIWLYDDG TFGFGFSGSN SIIDLKHVSS DGCILDALH

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.