CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12350.1	KRG89812	AT2G41090.1	17360592
AT3G12350.1	KRG94975	AT2G41090.1	17360592
AT3G12350.1	KRH18664	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88766	Soybean	cytosol	87.16	88.97
VIT_18s0001g09030.t01	Wine grape	cytosol	56.31	53.3
PGSC0003DMT400027549	Potato	cytosol	53.6	52.19
Bra000633.1-P	Field mustard	cytosol	41.44	46.94
CDX83150	Canola	cytosol	41.89	46.5
AT3G12350.1	Thale cress	cytosol	44.14	46.45
CDY34020	Canola	cytosol	41.89	46.04
GSMUA_Achr7P26160_001	Banana	nucleus	48.42	45.84
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	38.29	44.04
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	38.29	43.81
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	37.84	43.3
KXG23560	Sorghum	extracellular, plasma membrane, plastid	37.84	42.97
Zm00001d035303_P001	Maize	cytosol, plasma membrane, plastid	38.06	42.36
Os12t0511000-01	Rice	extracellular	36.49	40.6

Protein Annotations

EMBL:ACUP02010759	EnsemblPlants:KRH05573	EnsemblPlantsGene:GLYMA_17G234600	EntrezGene:100779297	Gene3D:1.20.1280.50	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PFAM:PF00646
PFscan:PS50181	ProteinID:KRH05573	ProteinID:KRH05573.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI000233E4EB
UniProt:I1MXH3	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:38991506..38993979

Molecular Weight (calculated)

49925.9 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.359

Length

444 amino acids

Sequence
(BLAST)

001: MANNEKDACS SFTDFPEDIQ VCILSFLGPP EIATLACTSK RMGSLCATDS KLWFSMCERR WGSYTRITQW AQGKNPTLSF KHLYNTLHRW ENLLGFWRRS
101: GTGIPSLLFF EWGPSFISAS RVSPSASDSN SVTYGVTKTP FLWMSLSEEG HVVTYLDPDG RSDFKPEIRS ELVAVDVSFM GKTHLVVEEK RVRGGACHDC
201: GDDVVVVESG SPPEKLMAEI YQHFANPRSP GSDRSRRQRR REKERLAGRK WEPQHFVKIV NCSPTPARPL QGLWKGICGD MSLAFYLVGY DDIGGIACRR
301: IGDPPDRFSG HAPVFWTSNA TFLESPFSPE EESLYDSRVH LRPLQPGNEV LEQFPFSDSE VVNQIQQFQL SDNVVDRILH ISSSYDLVVP DLAGTLNPRS
401: AEGRIWQYRN GTFGFGFLSD NFVIDMKHIV HNGCIVDTVN SSAN

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.