CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34020	Canola	cytosol	96.5	95.54
Bra000633.1-P	Field mustard	cytosol	93.5	95.41
AT3G12350.1	Thale cress	cytosol	73.75	69.91
VIT_18s0001g09030.t01	Wine grape	cytosol	52.25	44.56
PGSC0003DMT400027549	Potato	cytosol	48.75	42.76
KRG88766	Soybean	cytosol	45.75	42.07
KRH05573	Soybean	cytosol	46.5	41.89
KXG23560	Sorghum	extracellular, plasma membrane, plastid	36.5	37.34
GSMUA_Achr7P26160_001	Banana	nucleus	43.25	36.89
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	35.0	36.27
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	35.0	36.08
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	34.25	35.31
Zm00001d035303_P001	Maize	cytosol, plasma membrane, plastid	35.0	35.09
Os12t0511000-01	Rice	extracellular	34.75	34.84

Protein Annotations

EnsemblPlants:CDX83150	EnsemblPlantsGene:GSBRNA2T00138678001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PFAM:PF00646	PFscan:PS50181	ProteinID:CDX83150
ProteinID:CDX83150.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EEA4C6	MapMan:35.1

Description

BnaA03g23560D

Coordinates

chrLK031832:+:104772..106252

Molecular Weight (calculated)

45691.5 Da

IEP (calculated)

6.851

GRAVY (calculated)

-0.412

Length

400 amino acids

Sequence
(BLAST)

001: MALALCDIPE DLQLRILSFL SPTEICSFAC TSKRFASLCR EDRKIWHVVC DRRWGKKTQI RKWGNGRIAY KLLYRTLKRL ENLIGFWRLC GRANPADSSP
101: PLVFFEWGSS FVLGSRVLAT NDDTYRVRKT PFLVMGISPE GRTESFLDLD GNHRSGVSVD LSDLERSSLV PVDVNFMGNG HIMVEENPCF FREEQKKGSS
201: SGDDDEGGED VVSEMYTQLA NRTSPGGDRR RKRKKEKERQ ARIKWEPEHF IKVSDFSPTL AKPLQGLWKG FCEGRNLELY LVKYDEVGGV ICKKVEDLSL
301: SRQTSPVFWT PNHAFIRSPF SVEEEMILDS RIRITPLHGE VHEQVISGML YMNSSYDPGE GRVWLYENGT FGFGFLRDQF ITDLKRVALE DGCLADVLDA

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.