CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83150	Canola	cytosol	95.54	96.5
Bra000633.1-P	Field mustard	cytosol	90.59	93.37
AT3G12350.1	Thale cress	cytosol	73.51	70.38
VIT_18s0001g09030.t01	Wine grape	cytosol	51.73	44.56
PGSC0003DMT400027549	Potato	cytosol	49.51	43.86
KRG88766	Soybean	cytosol	45.3	42.07
KRH05573	Soybean	cytosol	46.04	41.89
KXG23560	Sorghum	extracellular, plasma membrane, plastid	36.14	37.34
GSMUA_Achr7P26160_001	Banana	nucleus	43.32	37.31
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	35.4	37.05
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	35.4	36.86
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	34.65	36.08
Zm00001d035303_P001	Maize	cytosol, plasma membrane, plastid	35.4	35.84
Os12t0511000-01	Rice	extracellular	35.15	35.59

Protein Annotations

EnsemblPlants:CDY34020	EnsemblPlantsGene:GSBRNA2T00055885001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PFAM:PF00646	PFscan:PS50181	ProteinID:CDY34020
ProteinID:CDY34020.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EF287B	UniProt:A0A078H648
MapMan:35.1	:	:	:	:	:

Description

BnaC03g27950DBnaC03g27950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H648]

Coordinates

chrLK032326:+:206417..207963

Molecular Weight (calculated)

46025.9 Da

IEP (calculated)

6.412

GRAVY (calculated)

-0.401

Length

404 amino acids

Sequence
(BLAST)

001: MALALSDIPE DLQLRILSFL SPTEICSFAC TSKRFASLCR EDRKIWHVMC DRRWGKKTQI QKWGNGRIAY KLLYRTLKRL ENLIGFWRLC GRANPADSSP
101: PLVFFEWGSS FVLGSRVLAT NDDTYRVRKT PFLVLGISPE GRTENFLDLD GNHRSGVPVD LSELERSSLV PVDVNFMGNG HIMVEENPCF FREEQKSPVC
201: KGSSSGDDDE GSEDVVSEMY TQLANRTSPG GDGRRKRKKE RERQARIKWE PEHFIKVSDF SPTLAKPLQG LWKGFCEGRN LELYLVKYDD VGGVICKKVE
301: DLSLSRQTSP VFWTPNHAFI RSPFSVEEEL ILDSRIHITP LRGEVHEQVI SGMLYMNSSY DPGEGRVWLY ENGTFGFGFL RDQFITDLKR VALEDGCLAD
401: VLDA

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.