CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12350.1	EES01631	AT2G41090.1	17360592
AT3G12350.1	EES09201	AT2G41090.1	17360592
AT3G12350.1	EES16322	AT2G41090.1	17360592
AT3G12350.1	OQU78227	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035303_P001	Maize	cytosol, plasma membrane, plastid	89.26	87.47
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	74.17	74.74
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	73.66	74.61
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	73.91	74.48
Os12t0511000-01	Rice	extracellular	75.45	73.93
KRG88766	Soybean	cytosol	42.71	38.39
KRH05573	Soybean	cytosol	42.97	37.84
Bra000633.1-P	Field mustard	cytosol	37.6	37.5
GSMUA_Achr7P26160_001	Banana	nucleus	44.5	37.1
CDX83150	Canola	cytosol	37.34	36.5
VIT_18s0001g09030.t01	Wine grape	cytosol	43.73	36.46
CDY34020	Canola	cytosol	37.34	36.14
PGSC0003DMT400027549	Potato	cytosol	39.13	33.55
AT3G12350.1	Thale cress	cytosol	35.04	32.46

Protein Annotations

EnsemblPlants:KXG23560	EnsemblPlantsGene:SORBI_3008G110300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
ProteinID:KXG23560	ProteinID:KXG23560.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI00081ADA1B	UniProt:A0A1B6PCY1
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:51319643..51322937

Molecular Weight (calculated)

41715.5 Da

IEP (calculated)

5.935

GRAVY (calculated)

-0.086

Length

391 amino acids

Sequence
(BLAST)

001: MGSIPAAAAG PGTALEDLPE DALLCILALL APPDAAAAAC ACRRLAAAAS SPALPLALAL RLGLPPPPLL PAAPCPAAAR RLIRSLHRLR RLLGLWRRLP
101: SGSGYASPSL AAFEWAPRAT LAASLLAPSA DGGVGVSKSP FVTLSIDESG DTVAVVGEVP VCVNFVGNNH IVVEAAAAGE DEEVEMVSGS PPEEMYAHFA
201: NRRSPGAGRR RRGKQGKRGG GMEAEHFVRI ADTEPTKARP LQGLWKGICE DRSLEFYLVT YDNIGGVTCR RFRDSRSQSS GYSPVFWTTD TTFLEPPFSE
301: QELDNYTNRD RIQCVTSNHA GTENRVISRI LCINSSYDVV DPHLSTPFDD GRSVEGRIWL YEDGTFGFGF VGSNSIIDLR HVSSAGCILD T

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.