CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12350.1	KRG89812	AT2G41090.1	17360592
AT3G12350.1	KRG94975	AT2G41090.1	17360592
AT3G12350.1	KRH18664	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05573	Soybean	cytosol	88.97	87.16
VIT_18s0001g09030.t01	Wine grape	cytosol	57.24	53.09
PGSC0003DMT400027549	Potato	cytosol	53.56	51.1
Bra000633.1-P	Field mustard	cytosol	42.07	46.68
CDX83150	Canola	cytosol	42.07	45.75
AT3G12350.1	Thale cress	cytosol	44.37	45.73
GSMUA_Achr7P26160_001	Banana	nucleus	49.2	45.63
CDY34020	Canola	cytosol	42.07	45.3
TraesCS5D01G114900.1	Wheat	extracellular, peroxisome, plastid	39.31	44.3
TraesCS5B01G107300.1	Wheat	cytosol, peroxisome, plastid	39.31	44.07
TraesCS5A01G103000.1	Wheat	extracellular, peroxisome, plastid	39.08	43.81
KXG23560	Sorghum	extracellular, plasma membrane, plastid	38.39	42.71
Zm00001d035303_P001	Maize	cytosol, plasma membrane, plastid	38.39	41.85
Os12t0511000-01	Rice	extracellular	37.47	40.85

Protein Annotations

EnsemblPlants:KRG88766	EnsemblPlantsGene:GLYMA_U030700	EntrezGene:100799602	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PFAM:PF00646	PFscan:PS50181
ProteinID:KRG88766	ProteinID:KRG88766.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI000233B59A	UniProt:I1M8U4
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_28:+:303527..306037

Molecular Weight (calculated)

49197.9 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.383

Length

435 amino acids

Sequence
(BLAST)

001: MANNENETCS FTDFPEDIQV SILSFLGPSE IATLACTSKK LGSLCSTVSK LWFSMCERRW GSNTRITQWA QKPAISFKQL YHTLHRWENL LGFWRRSGTG
101: IPSLLFFEWG PSFISASRVS PSDSDSNTYG VTKTPFLWMS LSEEGHVVTF LDPDGRRSDF KPENRSELVA VDVSFMGKTH FVVEEKRVRG GDDDVVVAES
201: GSPPERLMAE IYQHFANPRS PGSDRSRRQR RREKERLYGR KWEPQHFVKI VNCSPTPARP LQGLWKGICG DMSLAFYLVA YDDIGGIACR WIGDPPDHFS
301: GQAPVFWTSN ATFLESPFSP EEESLYDSRV HLQPLQLGNE VLEQFPLSDC ELVNQIQQFQ LSGNVVNRIH HISSSYDLVV PGLAGTMNRR SAEGRIWQYR
401: NGTFGFGFLS DNFVIDMKHI VHNGCIVDTV NSSAN

Best Arabidopsis Sequence Match ( AT3G12350.1 )
(BLAST)

001: MATFALPFCE IPEDLQLRIL SLLTPAEISS FACTSKRFAS LCQEDGKIWH VMCDQRWGKK TKIQKWANGQ IPYRHLYKTL KGLENLIGFW RLCGRANPAA
101: SSPPLVFFDW GSSFILGSRV LSTGDDTYEV KKTPFLLMGI SPEGRSENFL DLVGGNLRSV DDDLKELEAS NNLVSVDVNF MGNGHIMVEE NRCFTNNNRR
201: EDQRSSGDES DDLISSPNFS EMYTQLANKT SPGGDRRRQK RKEKERQASR TKWEPEHFLK VADCSPTPTR PLQGLWKGFC EGSIELYLVK YDEVGGIICR
301: KVEDLSLSRY TPPVFWTPKH TFIRSPFSAE EELLLNSRIH ISPFAEVHEN VVSGMLYMKS SCDLVLPGEP GNGIGFLRGE GRVWLYDNGT FGFGFLRDQF
401: IIDLKRVALE DGCLADEVEA CM

Arabidopsis Description

F-box protein At3g12350 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.